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Accept loom file format as input #124

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sjfleming opened this issue Mar 31, 2022 · 4 comments
Closed

Accept loom file format as input #124

sjfleming opened this issue Mar 31, 2022 · 4 comments
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This will assist with a Broad DSP User Ed workshop in the near future, and could be helpful generally if people want to use the loom file format.

Since anndata is already a dependency, this is straightforward

@sjfleming sjfleming self-assigned this Mar 31, 2022
@sjfleming sjfleming added the enhancement New feature or improvement label Mar 31, 2022
@sjfleming sjfleming added this to the v0.3.0 milestone Mar 31, 2022
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sjfleming commented Mar 31, 2022

It seems we need to introduce a dependency on loompy as well

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sjfleming commented Mar 31, 2022

Loom is also extremely flexible. We will have to obey some sort of spec about formatting conventions. I assume we will try to follow Optimus conventions

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@sjfleming sjfleming mentioned this issue Mar 28, 2023
@sjfleming sjfleming mentioned this issue Aug 6, 2023
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Closed by #238

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