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PON - unable to find an inherited method for function ‘seqinfo’ for signature ‘"data.table"’ #110

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EvoMedLab opened this issue May 25, 2022 · 2 comments

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@EvoMedLab
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I am trying to create a panel of normals from 8 samples, but execution halts. I have checked the input wig files and they appear correct:

Attaching package: ‘S4Vectors’
The following objects are masked from ‘package:data.table’:
first, second
The following objects are masked from ‘package:base’:
expand.grid, I, unname
Loading required package: IRanges
Attaching package: ‘IRanges’
The following object is masked from ‘package:data.table’:
shift

Error in (function (classes, fdef, mtable) :
unable to find an inherited method for function ‘seqinfo’ for signature ‘"data.table"’
Calls: loadReadCountsFromWig ... seqlevelsStyle<- -> seqlevelsStyle<- -> seqinfo ->
Execution halted

@EvoMedLab
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EvoMedLab commented May 27, 2022

I confirmed that I receive this error, even when comparing a tumor-normal pair

Correcting Tumour
Error in (function (classes, fdef, mtable) :
unable to find an inherited method for function ‘seqinfo’ for signature ‘"data.table"’
Calls: loadReadCountsFromWig ... seqlevelsStyle<- -> seqlevelsStyle<- -> seqinfo ->

@Kange2014
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Check the version you are using. Pls. make sure u are using the script of the cloned version from the github.

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