Cannot create new gene lists (i.e. seems like only a limited number of gene lists can be created/added)

[Noma-M]

Describe the bug
Trying to create more than one gene list with each list representing a targeted gene panel. Thirteen different gene lists were successfully added. As more gene lists are being added nothing pops up under the "my gene lists" page.
It also seems like each user belonging to main project can only add a limited number of gene lists. For example, of the thirteen gene lists already created one user created 8 lists and could not create more. The 5 remaining gene lists were added by other users.

Link to page(s) where bug is occurring
Add Gene Lists on seqr

Scope of the bug
Gene lists on the main workspace

Screenshots

may access this page and select for "Create new gene list"

may successfully add details for the gene list and select submit

However, after submitting nothing pops up on this page with the newly added gene list:

[hanars]

Hi Nora,

There is no limit to the number of gene lists that can be added in seqr, or to the number of lists a single user can add. This sounds like a bug in your installation. At this point in time, can other users still add gene lists and there is one user who can not? Or can no user add gene lists anymore? When did this issue start occurring for you?

It would also be helpful if you could

1. Attach the logs for the seqr container (docker-compose logs seqr)
2. Attach a copy of the docker-compose file you are currently running
3. Confirm when was the last time you updated your seqr image

[Noma-M]

Good day, thank you for your response. No user in our group can add gene lists. We are using seqr on AnVIL/Terra, i.e. not a local installation so there will be no container logs. Kind regards, Noma <https://www.avast.com/sig-email?utm_medium=email&utm_source=link&utm_campaign=sig-email&utm_content=webmail> Virus-free. www.avast.com <https://www.avast.com/sig-email?utm_medium=email&utm_source=link&utm_campaign=sig-email&utm_content=webmail> <#DAB4FAD8-2DD7-40BB-A1B8-4E2AA1F9FDF2>

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On Mon, 9 May 2022 at 16:34, hanars ***@***.***> wrote: Hi Nora, There is no limit to the number of gene lists that can be added in seqr, or to the number of lists a single user can add. This sounds like a bug in your installation. At this point in time, can other users still add gene lists and there is one user who can not? Or can no user add gene lists anymore? When did this issue start occurring for you? It would also be helpful if you could 1. Attach the logs for the seqr container (docker-compose logs seqr) 2. Attach a copy of the docker-compose file you are currently running 3. Confirm when was the last time you updated your seqr image — Reply to this email directly, view it on GitHub <#2708 (comment)>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/ASQG2CNLFXYNDMGD5RNA6SLVJEPBBANCNFSM5VOPQTSA> . You are receiving this because you authored the thread.Message ID: ***@***.***>

[hanars]

There appears to be a bug in seqr where if you provide invalid gene names it exits without creating the list instead of showing you the error. I have created #2711 to track the work for fixing this issue.

[hanars]

Hi Nora, this bug is now fixed in seqr. Please give it a try and let me know if your users are still experiencing the issue

[Noma-M]

Good day, thank you. It has been fixed. Users are able to add gene lists with an error notification that specifies the invalid gene name(s). Many thanks!

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On Wed, 11 May 2022 at 17:06, hanars ***@***.***> wrote: Hi Nora, this bug is now fixed in seqr. Please give it a try and let me know if your users are still experiencing the issue — Reply to this email directly, view it on GitHub <#2708 (comment)>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/ASQG2CNOSQQ4PNJJZDFMGGLVJPEIFANCNFSM5VOPQTSA> . You are receiving this because you authored the thread.Message ID: ***@***.***>