Gene annotation missing for variant in SEQR web interface

[fbelleau]

Describe the bug
We have two local installation of most recent seqr docker image

REPOSITORY TAG IMAGE ID CREATED SIZE
gcr.io/seqr-project/seqr gcloud-prod f98a977f619a 8 days ago 2.4GB

On one server #1 we have the gene annotation shown properly and on server #2 we do not have annotation and only the ensembl ID is shown.

Can you help me identify the missing annotation file on server 2 or a log file I can look into to find an explanation ?

Link to page(s) where bug is occurring

http://server_1/variant_search/variant/1-874778-GCCTCCCCAGCCACGGTGAGGACCCACCCTGGCATGATCCCCCTCATCA-G/family/F000017_01_129

http://server_2/project/R0005_fam129_v38_v2/saved_variants/variant/SV0000007_1939398_f000004_01_1

Scope of the bug
It is a server issue during the visualisation of variant.

Screenshots

Annotation on server #1

Annotation missing on server #2

[hanars]

It looks like on server #2 the gene-level reference data is not properly populated. This should have happened automatically when the docker image was pulled, but you can manually rerun the command by running docker-compose exec seqr python -u manage.py update_all_reference_data --use-cached-omim

[fbelleau]

It as solved the problem thank you.