Updates to improve compliance with the IOOS Compliance Checker (glide… #163
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…rdac:3.0)
* Still need to ignore `ancillary_variable` recommendations
* ncprocess.py
* profile_id: Max int32 type; attributes valid max and min also need to be same type; _FillValue = -999
* platform: Max int32 type; _FillValue = -999
* set time encoding to float to avoid UserWarnings about time conversion
* slocum.py
* If import test fails for dbdreader, the flag should be False for have_dbdreader?
* Need pandas to help avoid UserWarnings about time conversion; set encoding to float for time encoding
* depth: valid min/max and _FillValue updates to match gliderdac:3.0
* Other updates from char to float to match gliderdac:3.0
* Obtain direct version of libnetcdf (borrow code from xarray)
* tests
* Add README to discover location of example data
Other things that should be added/updated to respective deployment.yml files to improve
compliance. Once that is done, things are squeaky clean.
```
$ compliance-checker -t gliderdac:3.0 -s check_ancillary_variables pyglider/L0-profiles/unit507-20240325T1507.nc
Running Compliance Checker on the datasets from: ['pyglider/L0-profiles/unit507-20240325T1507.nc']
--------------------------------------------------------------------------------
IOOS Compliance Checker Report
Version unknown
Report generated 2024-03-26T00:50:22Z
gliderdac:3.0
https://ioos.github.io/glider-dac/ngdac-netcdf-file-format-version-2
--------------------------------------------------------------------------------
All tests passed!
```
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FIX: bad maxgap default
DOC: minor change to test pypi workflow
DOC: minor change to test pypi workflow
MNT: version change 0.0.7
MNT: version change
DOC: fix data link in slocum desc
DOC: small changes to slocum
DOC: small changes to slocum
DOC: small changes to slocum
* Add gitignore files and directories created by running pytest * Allow setting time and calendar units from yml configuration file * Fix to allow profile_time_start and profile_time_end to get time information by moving time_1970 to last variable processed in for loop * Emit warning for variables lacking data for gridding * Add resync_metadata_and_encoding to allow overriding of metadata from yml configuration file * Fix log message for raw_to_timeseries * Allow conversion of slocum latitude and longitude from NMEA to degrees * Emit log message when metadata is overridden from yml configuration file * Add utils function to determine pyglider version * Add utils function to determine netcdf C and python versions * Set units for profile_time in example-slocum/deploymentRealtime.yml to get proper units for profile_time * Remove history and netcdf attributes as they can now vary widely from static examples
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…rdac:3.0)
ancillary_variablerecommendations or skip specific testOther things that should be added/updated to respective deployment.yml files to improve compliance. Once that is done, things are squeaky clean.