pipes-stats

This is a simple portal to see the usage stats of mugqic pipelines.

The portal lives here: https://bigbrother.c3g-app.sd4h.ca

Installation

Just run the conttainer found here: https://quay.io/repository/c3genomics/pipes_stats The server run on port 8081 two files, pipes_stats.db and mugqic_pipelines.log need to be in the conatainers /data folder

run:

podman run --rm -it  -p 8888:8081 -v <path to data data on host>:/data:Z   quay.io/c3genomics/pipes_stats

Backend

Install apache with ./pipes.conf as configuration. Make sure to adjust the paths. ./cgi-bin/ must be the CGI scripts directory, and the ./build directory (created in the frontend step below) must be the document root of the apache server.

And for the environment variables:

• PIPES_LOG must point to the log file
• PIPES_DB must point to be the sqlite db path (managed by the app, just need to be read/writeable)

Frontend

npm install
npm run build

Commands

Run: npm run start Build npm run build

Development

In development, you'd run npm start. The .proxy field in package.json indicates to the webpack-dev-server to proxy API requests to the running apache server, make sure to adjust it if apache is running on a different port than 8080 on your local setup. This only applies for development. In production, apache serves both the CGI scripts and the frontend files in ./build.