get mutation data from genomic event table instead of mutation table (#…

…10289)
cBioPortal · Jul 26, 2023 · 4be9db4 · 4be9db4
1 parent 6987580
commit 4be9db4
Showing 1 changed file with 4 additions and 3 deletions.
diff --git a/...atis/src/main/resources/org/cbioportal/persistence/mybatiscolumnstore/StudyViewMapper.xml b/...atis/src/main/resources/org/cbioportal/persistence/mybatiscolumnstore/StudyViewMapper.xml
@@ -31,14 +31,15 @@
             COUNT(DISTINCT sample_unique_id) as numberOfProfiledCases,
             COUNT(DISTINCT sample_unique_id) as numberOfAlteredCases,
             COUNT(*) as totalCount
-        FROM mutation
+        FROM genomic_event
         <where>
-           sample_unique_id IN ( <include refid="sampleUniqueIdsFromStudyViewFilter"/>
+            variant_type = 'mutation'
+            AND
+            sample_unique_id IN ( <include refid="sampleUniqueIdsFromStudyViewFilter"/>
             <if test="applyPatientIdFilters == true">
                 INTERSECT <include refid="getSampleIdsFromPatientIds"/>
             </if> 
             )
-
         </where>
         GROUP BY hugo_gene_symbol
         ORDER BY totalCount DESC;