Merge branch 'master' into Ancestry_pancan

public/dlbc_tcga_pan_can_atlas_2018/case_lists/cases_methylation_all.txt

@@ -0,0 +1,6 @@
+cancer_study_identifier: dlbc_tcga_pan_can_atlas_2018
+stable_id: dlbc_tcga_pan_can_atlas_2018_methylation_all
+case_list_name: Samples with methylation data
+case_list_description: Samples with methylation data (48 samples)
+case_list_category: all_cases_with_methylation_data
+case_list_ids: TCGA-FA-8693-01	TCGA-FA-A4BB-01	TCGA-FA-A4XK-01	TCGA-FA-A6HN-01	TCGA-FA-A6HO-01	TCGA-FA-A7DS-01	TCGA-FA-A7Q1-01	TCGA-FA-A82F-01	TCGA-FA-A86F-01	TCGA-FF-8041-01	TCGA-FF-8042-01	TCGA-FF-8043-01	TCGA-FF-8046-01	TCGA-FF-8047-01	TCGA-FF-8061-01	TCGA-FF-8062-01	TCGA-FF-A7CQ-01	TCGA-FF-A7CR-01	TCGA-FF-A7CW-01	TCGA-FF-A7CX-01	TCGA-FM-8000-01	TCGA-G8-6324-01	TCGA-G8-6325-01	TCGA-G8-6326-01	TCGA-G8-6906-01	TCGA-G8-6907-01	TCGA-G8-6909-01	TCGA-G8-6914-01	TCGA-GR-7351-01	TCGA-GR-7353-01	TCGA-GR-A4D4-01	TCGA-GR-A4D5-01	TCGA-GR-A4D6-01	TCGA-GR-A4D9-01	TCGA-GS-A9TQ-01	TCGA-GS-A9TT-01	TCGA-GS-A9TU-01	TCGA-GS-A9TV-01	TCGA-GS-A9TW-01	TCGA-GS-A9TX-01	TCGA-GS-A9TY-01	TCGA-GS-A9TZ-01	TCGA-GS-A9U3-01	TCGA-GS-A9U4-01	TCGA-RQ-A68N-01	TCGA-RQ-A6JB-01	TCGA-RQ-AAAT-01	TCGA-VB-A8QN-01

public/dlbc_tcga_pan_can_atlas_2018/case_lists/cases_methylation_hm450.txt

@@ -0,0 +1,6 @@
+cancer_study_identifier: dlbc_tcga_pan_can_atlas_2018
+stable_id: dlbc_tcga_pan_can_atlas_2018_methylation_hm450
+case_list_name: Samples with methylation data (HM450)
+case_list_description: Samples with methylation (HM450) data (48 samples)
+case_list_category: all_cases_with_methylation_data
+case_list_ids: TCGA-FA-8693-01	TCGA-FA-A4BB-01	TCGA-FA-A4XK-01	TCGA-FA-A6HN-01	TCGA-FA-A6HO-01	TCGA-FA-A7DS-01	TCGA-FA-A7Q1-01	TCGA-FA-A82F-01	TCGA-FA-A86F-01	TCGA-FF-8041-01	TCGA-FF-8042-01	TCGA-FF-8043-01	TCGA-FF-8046-01	TCGA-FF-8047-01	TCGA-FF-8061-01	TCGA-FF-8062-01	TCGA-FF-A7CQ-01	TCGA-FF-A7CR-01	TCGA-FF-A7CW-01	TCGA-FF-A7CX-01	TCGA-FM-8000-01	TCGA-G8-6324-01	TCGA-G8-6325-01	TCGA-G8-6326-01	TCGA-G8-6906-01	TCGA-G8-6907-01	TCGA-G8-6909-01	TCGA-G8-6914-01	TCGA-GR-7351-01	TCGA-GR-7353-01	TCGA-GR-A4D4-01	TCGA-GR-A4D5-01	TCGA-GR-A4D6-01	TCGA-GR-A4D9-01	TCGA-GS-A9TQ-01	TCGA-GS-A9TT-01	TCGA-GS-A9TU-01	TCGA-GS-A9TV-01	TCGA-GS-A9TW-01	TCGA-GS-A9TX-01	TCGA-GS-A9TY-01	TCGA-GS-A9TZ-01	TCGA-GS-A9U3-01	TCGA-GS-A9U4-01	TCGA-RQ-A68N-01	TCGA-RQ-A6JB-01	TCGA-RQ-AAAT-01	TCGA-VB-A8QN-01

public/dlbc_tcga_pan_can_atlas_2018/meta_methylation_hm450.txt

@@ -0,0 +1,11 @@
+cancer_study_identifier: dlbc_tcga_pan_can_atlas_2018
+genetic_alteration_type: GENERIC_ASSAY
+generic_assay_type: METHYLATION
+datatype: LIMIT-VALUE
+stable_id: methylation_hm450
+profile_name: Methylation (HM450)
+profile_description: Methylation beta-values (HM450 platform). For genes with multiple methylation probes, the probe least correlated with expression is selected.
+data_filename: data_methylation_hm450.txt
+show_profile_in_analysis_tab: true
+value_sort_order: DESC
+generic_entity_meta_properties: NAME,DESCRIPTION,TRANSCRIPT_ID

public/esca_tcga_pan_can_atlas_2018/case_lists/cases_methylation_all.txt

@@ -0,0 +1,6 @@
+cancer_study_identifier: esca_tcga_pan_can_atlas_2018
+stable_id: esca_tcga_pan_can_atlas_2018_methylation_all
+case_list_name: Samples with methylation data
+case_list_description: Samples with methylation data (182 samples)
+case_list_category: all_cases_with_methylation_data
+case_list_ids: TCGA-2H-A9GF-01	TCGA-2H-A9GH-01	TCGA-2H-A9GI-01	TCGA-2H-A9GJ-01	TCGA-2H-A9GK-01	TCGA-2H-A9GL-01	TCGA-2H-A9GM-01	TCGA-2H-A9GN-01	TCGA-2H-A9GO-01	TCGA-2H-A9GQ-01	TCGA-2H-A9GR-01	TCGA-IC-A6RE-01	TCGA-IG-A3I8-01	TCGA-IG-A3QL-01	TCGA-IG-A3Y9-01	TCGA-IG-A3YA-01	TCGA-IG-A3YB-01	TCGA-IG-A3YC-01	TCGA-IG-A4P3-01	TCGA-IG-A4QS-01	TCGA-IG-A4QT-01	TCGA-IG-A50L-01	TCGA-IG-A51D-01	TCGA-IG-A5B8-01	TCGA-IG-A5S3-01	TCGA-IG-A625-01	TCGA-IG-A6QS-01	TCGA-IG-A7DP-01	TCGA-IG-A8O2-01	TCGA-IG-A97H-01	TCGA-IG-A97I-01	TCGA-JY-A6F8-01	TCGA-JY-A6FA-01	TCGA-JY-A6FB-01	TCGA-JY-A6FD-01	TCGA-JY-A6FE-01	TCGA-JY-A6FG-01	TCGA-JY-A6FH-01	TCGA-JY-A938-01	TCGA-JY-A939-01	TCGA-JY-A93C-01	TCGA-JY-A93D-01	TCGA-JY-A93E-01	TCGA-JY-A93F-01	TCGA-KH-A6WC-01	TCGA-L5-A43C-01	TCGA-L5-A43E-01	TCGA-L5-A43H-01	TCGA-L5-A43I-01	TCGA-L5-A43J-01	TCGA-L5-A43M-01	TCGA-L5-A4OE-01	TCGA-L5-A4OF-01	TCGA-L5-A4OG-01	TCGA-L5-A4OH-01	TCGA-L5-A4OI-01	TCGA-L5-A4OJ-01	TCGA-L5-A4OM-01	TCGA-L5-A4ON-01	TCGA-L5-A4OO-01	TCGA-L5-A4OP-01	TCGA-L5-A4OQ-01	TCGA-L5-A4OR-01	TCGA-L5-A4OS-01	TCGA-L5-A4OT-01	TCGA-L5-A4OU-01	TCGA-L5-A4OW-01	TCGA-L5-A4OX-01	TCGA-L5-A88S-01	TCGA-L5-A88V-01	TCGA-L5-A88W-01	TCGA-L5-A88Y-01	TCGA-L5-A88Z-01	TCGA-L5-A891-01	TCGA-L5-A893-01	TCGA-L5-A8NE-01	TCGA-L5-A8NF-01	TCGA-L5-A8NG-01	TCGA-L5-A8NH-01	TCGA-L5-A8NI-01	TCGA-L5-A8NJ-01	TCGA-L5-A8NK-01	TCGA-L5-A8NL-01	TCGA-L5-A8NM-01	TCGA-L5-A8NN-01	TCGA-L5-A8NQ-01	TCGA-L5-A8NR-01	TCGA-L5-A8NS-01	TCGA-L5-A8NT-01	TCGA-L5-A8NU-01	TCGA-L5-A8NV-01	TCGA-L5-A8NW-01	TCGA-L7-A56G-01	TCGA-L7-A6VZ-01	TCGA-LN-A49K-01	TCGA-LN-A49L-01	TCGA-LN-A49M-01	TCGA-LN-A49N-01	TCGA-LN-A49O-01	TCGA-LN-A49P-01	TCGA-LN-A49R-01	TCGA-LN-A49S-01	TCGA-LN-A49U-01	TCGA-LN-A49V-01	TCGA-LN-A49W-01	TCGA-LN-A49X-01	TCGA-LN-A49Y-01	TCGA-LN-A4A1-01	TCGA-LN-A4A2-01	TCGA-LN-A4A3-01	TCGA-LN-A4A4-01	TCGA-LN-A4A5-01	TCGA-LN-A4A6-01	TCGA-LN-A4A8-01	TCGA-LN-A4A9-01	TCGA-LN-A4MQ-01	TCGA-LN-A4MR-01	TCGA-LN-A5U5-01	TCGA-LN-A5U6-01	TCGA-LN-A5U7-01	TCGA-LN-A7HV-01	TCGA-LN-A7HW-01	TCGA-LN-A7HX-01	TCGA-LN-A7HY-01	TCGA-LN-A7HZ-01	TCGA-LN-A8HZ-01	TCGA-LN-A8I0-01	TCGA-LN-A8I1-01	TCGA-LN-A9FO-01	TCGA-LN-A9FP-01	TCGA-LN-A9FQ-01	TCGA-LN-A9FR-01	TCGA-M9-A5M8-01	TCGA-Q9-A6FU-01	TCGA-Q9-A6FW-01	TCGA-R6-A6DN-01	TCGA-R6-A6DQ-01	TCGA-R6-A6KZ-01	TCGA-R6-A6L4-01	TCGA-R6-A6L6-01	TCGA-R6-A6XG-01	TCGA-R6-A6XQ-01	TCGA-R6-A6Y0-01	TCGA-R6-A6Y2-01	TCGA-R6-A8W5-01	TCGA-R6-A8W8-01	TCGA-R6-A8WC-01	TCGA-R6-A8WG-01	TCGA-RE-A7BO-01	TCGA-S8-A6BV-01	TCGA-S8-A6BW-01	TCGA-V5-A7RB-01	TCGA-V5-A7RC-01	TCGA-V5-A7RE-01	TCGA-V5-AASV-01	TCGA-V5-AASW-01	TCGA-V5-AASX-01	TCGA-VR-A8EO-01	TCGA-VR-A8EP-01	TCGA-VR-A8EQ-01	TCGA-VR-A8ER-01	TCGA-VR-A8ET-01	TCGA-VR-A8EU-01	TCGA-VR-A8EW-01	TCGA-VR-A8EX-01	TCGA-VR-A8EY-01	TCGA-VR-A8EZ-01	TCGA-VR-A8Q7-01	TCGA-VR-AA4D-01	TCGA-VR-AA4G-01	TCGA-VR-AA7B-01	TCGA-VR-AA7D-01	TCGA-VR-AA7I-01	TCGA-X8-AAAR-01	TCGA-XP-A8T6-01	TCGA-XP-A8T7-01	TCGA-XP-A8T8-01	TCGA-Z6-A8JD-01	TCGA-Z6-A8JE-01	TCGA-Z6-A9VB-01	TCGA-Z6-AAPN-01	TCGA-ZR-A9CJ-01

public/esca_tcga_pan_can_atlas_2018/case_lists/cases_methylation_hm450.txt

@@ -0,0 +1,6 @@
+cancer_study_identifier: esca_tcga_pan_can_atlas_2018
+stable_id: esca_tcga_pan_can_atlas_2018_methylation_hm450
+case_list_name: Samples with methylation data (HM450)
+case_list_description: Samples with methylation (HM450) data (182 samples)
+case_list_category: all_cases_with_methylation_data
+case_list_ids: TCGA-2H-A9GF-01	TCGA-2H-A9GH-01	TCGA-2H-A9GI-01	TCGA-2H-A9GJ-01	TCGA-2H-A9GK-01	TCGA-2H-A9GL-01	TCGA-2H-A9GM-01	TCGA-2H-A9GN-01	TCGA-2H-A9GO-01	TCGA-2H-A9GQ-01	TCGA-2H-A9GR-01	TCGA-IC-A6RE-01	TCGA-IG-A3I8-01	TCGA-IG-A3QL-01	TCGA-IG-A3Y9-01	TCGA-IG-A3YA-01	TCGA-IG-A3YB-01	TCGA-IG-A3YC-01	TCGA-IG-A4P3-01	TCGA-IG-A4QS-01	TCGA-IG-A4QT-01	TCGA-IG-A50L-01	TCGA-IG-A51D-01	TCGA-IG-A5B8-01	TCGA-IG-A5S3-01	TCGA-IG-A625-01	TCGA-IG-A6QS-01	TCGA-IG-A7DP-01	TCGA-IG-A8O2-01	TCGA-IG-A97H-01	TCGA-IG-A97I-01	TCGA-JY-A6F8-01	TCGA-JY-A6FA-01	TCGA-JY-A6FB-01	TCGA-JY-A6FD-01	TCGA-JY-A6FE-01	TCGA-JY-A6FG-01	TCGA-JY-A6FH-01	TCGA-JY-A938-01	TCGA-JY-A939-01	TCGA-JY-A93C-01	TCGA-JY-A93D-01	TCGA-JY-A93E-01	TCGA-JY-A93F-01	TCGA-KH-A6WC-01	TCGA-L5-A43C-01	TCGA-L5-A43E-01	TCGA-L5-A43H-01	TCGA-L5-A43I-01	TCGA-L5-A43J-01	TCGA-L5-A43M-01	TCGA-L5-A4OE-01	TCGA-L5-A4OF-01	TCGA-L5-A4OG-01	TCGA-L5-A4OH-01	TCGA-L5-A4OI-01	TCGA-L5-A4OJ-01	TCGA-L5-A4OM-01	TCGA-L5-A4ON-01	TCGA-L5-A4OO-01	TCGA-L5-A4OP-01	TCGA-L5-A4OQ-01	TCGA-L5-A4OR-01	TCGA-L5-A4OS-01	TCGA-L5-A4OT-01	TCGA-L5-A4OU-01	TCGA-L5-A4OW-01	TCGA-L5-A4OX-01	TCGA-L5-A88S-01	TCGA-L5-A88V-01	TCGA-L5-A88W-01	TCGA-L5-A88Y-01	TCGA-L5-A88Z-01	TCGA-L5-A891-01	TCGA-L5-A893-01	TCGA-L5-A8NE-01	TCGA-L5-A8NF-01	TCGA-L5-A8NG-01	TCGA-L5-A8NH-01	TCGA-L5-A8NI-01	TCGA-L5-A8NJ-01	TCGA-L5-A8NK-01	TCGA-L5-A8NL-01	TCGA-L5-A8NM-01	TCGA-L5-A8NN-01	TCGA-L5-A8NQ-01	TCGA-L5-A8NR-01	TCGA-L5-A8NS-01	TCGA-L5-A8NT-01	TCGA-L5-A8NU-01	TCGA-L5-A8NV-01	TCGA-L5-A8NW-01	TCGA-L7-A56G-01	TCGA-L7-A6VZ-01	TCGA-LN-A49K-01	TCGA-LN-A49L-01	TCGA-LN-A49M-01	TCGA-LN-A49N-01	TCGA-LN-A49O-01	TCGA-LN-A49P-01	TCGA-LN-A49R-01	TCGA-LN-A49S-01	TCGA-LN-A49U-01	TCGA-LN-A49V-01	TCGA-LN-A49W-01	TCGA-LN-A49X-01	TCGA-LN-A49Y-01	TCGA-LN-A4A1-01	TCGA-LN-A4A2-01	TCGA-LN-A4A3-01	TCGA-LN-A4A4-01	TCGA-LN-A4A5-01	TCGA-LN-A4A6-01	TCGA-LN-A4A8-01	TCGA-LN-A4A9-01	TCGA-LN-A4MQ-01	TCGA-LN-A4MR-01	TCGA-LN-A5U5-01	TCGA-LN-A5U6-01	TCGA-LN-A5U7-01	TCGA-LN-A7HV-01	TCGA-LN-A7HW-01	TCGA-LN-A7HX-01	TCGA-LN-A7HY-01	TCGA-LN-A7HZ-01	TCGA-LN-A8HZ-01	TCGA-LN-A8I0-01	TCGA-LN-A8I1-01	TCGA-LN-A9FO-01	TCGA-LN-A9FP-01	TCGA-LN-A9FQ-01	TCGA-LN-A9FR-01	TCGA-M9-A5M8-01	TCGA-Q9-A6FU-01	TCGA-Q9-A6FW-01	TCGA-R6-A6DN-01	TCGA-R6-A6DQ-01	TCGA-R6-A6KZ-01	TCGA-R6-A6L4-01	TCGA-R6-A6L6-01	TCGA-R6-A6XG-01	TCGA-R6-A6XQ-01	TCGA-R6-A6Y0-01	TCGA-R6-A6Y2-01	TCGA-R6-A8W5-01	TCGA-R6-A8W8-01	TCGA-R6-A8WC-01	TCGA-R6-A8WG-01	TCGA-RE-A7BO-01	TCGA-S8-A6BV-01	TCGA-S8-A6BW-01	TCGA-V5-A7RB-01	TCGA-V5-A7RC-01	TCGA-V5-A7RE-01	TCGA-V5-AASV-01	TCGA-V5-AASW-01	TCGA-V5-AASX-01	TCGA-VR-A8EO-01	TCGA-VR-A8EP-01	TCGA-VR-A8EQ-01	TCGA-VR-A8ER-01	TCGA-VR-A8ET-01	TCGA-VR-A8EU-01	TCGA-VR-A8EW-01	TCGA-VR-A8EX-01	TCGA-VR-A8EY-01	TCGA-VR-A8EZ-01	TCGA-VR-A8Q7-01	TCGA-VR-AA4D-01	TCGA-VR-AA4G-01	TCGA-VR-AA7B-01	TCGA-VR-AA7D-01	TCGA-VR-AA7I-01	TCGA-X8-AAAR-01	TCGA-XP-A8T6-01	TCGA-XP-A8T7-01	TCGA-XP-A8T8-01	TCGA-Z6-A8JD-01	TCGA-Z6-A8JE-01	TCGA-Z6-A9VB-01	TCGA-Z6-AAPN-01	TCGA-ZR-A9CJ-01

public/esca_tcga_pan_can_atlas_2018/meta_methylation_hm450.txt

@@ -0,0 +1,11 @@
+cancer_study_identifier: esca_tcga_pan_can_atlas_2018
+genetic_alteration_type: GENERIC_ASSAY
+generic_assay_type: METHYLATION
+datatype: LIMIT-VALUE
+stable_id: methylation_hm450
+profile_name: Methylation (HM450)
+profile_description: Methylation beta-values (HM450 platform). For genes with multiple methylation probes, the probe least correlated with expression is selected.
+data_filename: data_methylation_hm450.txt
+show_profile_in_analysis_tab: true
+value_sort_order: DESC
+generic_entity_meta_properties: NAME,DESCRIPTION,TRANSCRIPT_ID

public/gbm_tcga_pan_can_atlas_2018/case_lists/cases_methylation_all.txt

@@ -0,0 +1,6 @@
+cancer_study_identifier: gbm_tcga_pan_can_atlas_2018
+stable_id: gbm_tcga_pan_can_atlas_2018_methylation_all
+case_list_name: Samples with methylation data
+case_list_description: Samples with methylation data (422 samples)
+case_list_category: all_cases_with_methylation_data
+case_list_ids: TCGA-02-2466-01	TCGA-02-2470-01	TCGA-02-2483-01	TCGA-02-2485-01	TCGA-02-2486-01	TCGA-06-1084-01	TCGA-06-1086-01	TCGA-06-1087-01	TCGA-06-1800-01	TCGA-06-1801-01	TCGA-06-1802-01	TCGA-06-1804-01	TCGA-06-1805-01	TCGA-06-1806-01	TCGA-06-2557-01	TCGA-06-2558-01	TCGA-06-2559-01	TCGA-06-2561-01	TCGA-06-2562-01	TCGA-06-2563-01	TCGA-06-2564-01	TCGA-06-2565-01	TCGA-06-2566-01	TCGA-06-2567-01	TCGA-06-2569-01	TCGA-06-2570-01	TCGA-06-5408-01	TCGA-06-5410-01	TCGA-06-5411-01	TCGA-06-5412-01	TCGA-06-5413-01	TCGA-06-5414-01	TCGA-06-5415-01	TCGA-06-5416-01	TCGA-06-5417-01	TCGA-06-5418-01	TCGA-06-5856-01	TCGA-06-5858-01	TCGA-06-5859-01	TCGA-06-6388-01	TCGA-06-6389-01	TCGA-06-6390-01	TCGA-06-6693-01	TCGA-06-6694-01	TCGA-06-6695-01	TCGA-06-6697-01	TCGA-06-6698-01	TCGA-06-6699-01	TCGA-06-6700-01	TCGA-06-6701-01	TCGA-06-A5U0-01	TCGA-06-A5U1-01	TCGA-06-A6S0-01	TCGA-06-A6S1-01	TCGA-06-A7TK-01	TCGA-06-A7TL-01	TCGA-12-1088-01	TCGA-12-1089-01	TCGA-12-1090-01	TCGA-12-1091-01	TCGA-12-1092-01	TCGA-12-1093-01	TCGA-12-1094-01	TCGA-12-1095-01	TCGA-12-1096-01	TCGA-12-1097-01	TCGA-12-1098-01	TCGA-12-1099-01	TCGA-12-1597-01	TCGA-12-1598-01	TCGA-12-1599-01	TCGA-12-1600-01	TCGA-12-1602-01	TCGA-12-3644-01	TCGA-12-3646-01	TCGA-12-3648-01	TCGA-12-3649-01	TCGA-12-3650-01	TCGA-12-3651-01	TCGA-12-3652-01	TCGA-12-3653-01	TCGA-12-5295-01	TCGA-12-5299-01	TCGA-12-5301-01	TCGA-14-1034-02	TCGA-14-1034-01	TCGA-14-1037-01	TCGA-14-1043-01	TCGA-14-1395-01	TCGA-14-1396-01	TCGA-14-1401-01	TCGA-14-1402-01	TCGA-14-1450-01	TCGA-14-1451-01	TCGA-14-1452-01	TCGA-14-1453-01	TCGA-14-1454-01	TCGA-14-1455-01	TCGA-14-1456-01	TCGA-14-1458-01	TCGA-14-1459-01	TCGA-14-1794-01	TCGA-14-1795-01	TCGA-14-1821-01	TCGA-14-1823-01	TCGA-14-1825-01	TCGA-14-1827-01	TCGA-14-1829-01	TCGA-14-2554-01	TCGA-14-2555-01	TCGA-14-3476-01	TCGA-14-3477-01	TCGA-14-4157-01	TCGA-15-1444-01	TCGA-15-1446-01	TCGA-15-1447-01	TCGA-15-1449-01	TCGA-16-1045-01	TCGA-16-1047-01	TCGA-16-1055-01	TCGA-16-1056-01	TCGA-16-1060-01	TCGA-16-1062-01	TCGA-16-1063-01	TCGA-16-1460-01	TCGA-19-1385-01	TCGA-19-1386-01	TCGA-19-1387-01	TCGA-19-1388-01	TCGA-19-1389-01	TCGA-19-1390-01	TCGA-19-1392-01	TCGA-19-1786-01	TCGA-19-1787-01	TCGA-19-1789-01	TCGA-19-1790-01	TCGA-19-1791-01	TCGA-19-2619-01	TCGA-19-2620-01	TCGA-19-2621-01	TCGA-19-2623-01	TCGA-19-2624-01	TCGA-19-2625-01	TCGA-19-2629-01	TCGA-19-2631-01	TCGA-19-4065-01	TCGA-19-4068-01	TCGA-19-5947-01	TCGA-19-5950-01	TCGA-19-5951-01	TCGA-19-5952-01	TCGA-19-5953-01	TCGA-19-5954-01	TCGA-19-5955-01	TCGA-19-5956-01	TCGA-19-5958-01	TCGA-19-5959-01	TCGA-19-5960-01	TCGA-19-A60I-01	TCGA-19-A6J4-01	TCGA-19-A6J5-01	TCGA-26-1438-01	TCGA-26-1439-01	TCGA-26-1440-01	TCGA-26-1442-01	TCGA-26-1443-01	TCGA-26-1799-01	TCGA-26-5132-01	TCGA-26-5133-01	TCGA-26-5134-01	TCGA-26-5135-01	TCGA-26-5136-01	TCGA-26-5139-01	TCGA-26-6173-01	TCGA-26-6174-01	TCGA-26-A7UX-01	TCGA-27-1830-01	TCGA-27-1831-01	TCGA-27-1832-01	TCGA-27-1833-01	TCGA-27-1834-01	TCGA-27-1835-01	TCGA-27-1836-01	TCGA-27-1837-01	TCGA-27-1838-01	TCGA-27-2518-01	TCGA-27-2519-01	TCGA-27-2521-01	TCGA-27-2523-01	TCGA-27-2524-01	TCGA-27-2526-01	TCGA-27-2527-01	TCGA-27-2528-01	TCGA-28-1746-01	TCGA-28-1747-01	TCGA-28-1749-01	TCGA-28-1750-01	TCGA-28-1751-01	TCGA-28-1752-01	TCGA-28-1753-01	TCGA-28-1755-01	TCGA-28-1756-01	TCGA-28-1757-01	TCGA-28-2499-01	TCGA-28-2502-01	TCGA-28-2506-01	TCGA-28-2509-01	TCGA-28-2513-01	TCGA-28-2514-01	TCGA-28-5204-01	TCGA-28-5207-01	TCGA-28-5208-01	TCGA-28-5209-01	TCGA-28-5211-01	TCGA-28-5213-01	TCGA-28-5214-01	TCGA-28-5215-01	TCGA-28-5216-01	TCGA-28-5218-01	TCGA-28-5219-01	TCGA-28-5220-01	TCGA-28-6450-01	TCGA-32-1970-01	TCGA-32-1973-01	TCGA-32-1976-01	TCGA-32-1977-01	TCGA-32-1978-01	TCGA-32-1979-01	TCGA-32-1980-01	TCGA-32-1982-01	TCGA-32-1986-01	TCGA-32-1987-01	TCGA-32-1991-01	TCGA-32-2491-01	TCGA-32-2494-01	TCGA-32-2495-01	TCGA-32-2615-01	TCGA-32-2616-01	TCGA-32-2632-01	TCGA-32-2634-01	TCGA-32-2638-01	TCGA-32-4208-01	TCGA-32-4209-01	TCGA-32-4210-01	TCGA-32-4211-01	TCGA-32-4213-01	TCGA-32-4719-01	TCGA-32-5222-01	TCGA-41-2571-01	TCGA-41-2572-01	TCGA-41-2573-01	TCGA-41-2575-01	TCGA-41-3392-01	TCGA-41-3393-01	TCGA-41-3915-01	TCGA-41-4097-01	TCGA-41-5651-01	TCGA-41-6646-01	TCGA-4W-AA9R-01	TCGA-4W-AA9S-01	TCGA-4W-AA9T-01	TCGA-74-6573-01	TCGA-74-6575-01	TCGA-74-6577-01	TCGA-74-6578-01	TCGA-74-6581-01	TCGA-74-6584-01	TCGA-76-4925-01	TCGA-76-4926-01	TCGA-76-4927-01	TCGA-76-4928-01	TCGA-76-4929-01	TCGA-76-4931-01	TCGA-76-4932-01	TCGA-76-4934-01	TCGA-76-4935-01	TCGA-76-6191-01	TCGA-76-6192-01	TCGA-76-6193-01	TCGA-76-6280-01	TCGA-76-6282-01	TCGA-76-6283-01	TCGA-76-6285-01	TCGA-76-6286-01	TCGA-76-6656-01	TCGA-76-6657-01	TCGA-76-6660-01	TCGA-76-6661-01	TCGA-76-6662-01	TCGA-76-6663-01	TCGA-76-6664-01	TCGA-81-5910-01	TCGA-81-5911-01	TCGA-87-5896-01	TCGA-OX-A56R-01	TCGA-RR-A6KA-01	TCGA-RR-A6KB-01	TCGA-RR-A6KC-01	TCGA-06-0881-01	TCGA-06-0125-01	TCGA-06-0125-02	TCGA-14-0871-01	TCGA-06-0124-01	TCGA-02-0014-01	TCGA-12-0818-01	TCGA-02-0038-01	TCGA-12-0821-01	TCGA-02-0010-01	TCGA-02-0089-01	TCGA-06-0171-01	TCGA-02-0115-01	TCGA-02-0043-01	TCGA-14-0789-01	TCGA-06-0121-01	TCGA-14-0813-01	TCGA-14-0866-01	TCGA-14-0817-01	TCGA-19-0964-01	TCGA-06-0211-01	TCGA-02-0058-01	TCGA-06-0142-01	TCGA-16-0848-01	TCGA-06-0130-01	TCGA-02-0085-01	TCGA-14-0812-01	TCGA-06-0876-01	TCGA-12-0827-01	TCGA-19-0960-01	TCGA-06-0141-01	TCGA-06-0137-01	TCGA-06-0221-01	TCGA-06-0140-01	TCGA-14-0783-01	TCGA-02-0114-01	TCGA-06-0145-01	TCGA-02-0021-01	TCGA-14-0787-01	TCGA-02-0057-01	TCGA-02-0047-01	TCGA-06-0169-01	TCGA-06-0171-02	TCGA-06-0875-01	TCGA-06-0877-01	TCGA-02-0001-01	TCGA-02-0116-01	TCGA-16-0846-01	TCGA-06-0221-02	TCGA-16-0861-01	TCGA-02-0028-01	TCGA-14-0867-01	TCGA-14-0862-01	TCGA-02-0024-01	TCGA-14-0736-01	TCGA-02-0086-01	TCGA-02-0033-01	TCGA-06-0147-01	TCGA-02-0075-01	TCGA-02-0074-01	TCGA-12-0822-01	TCGA-06-0882-01	TCGA-06-0133-01	TCGA-02-0113-01	TCGA-02-0102-01	TCGA-06-0148-01	TCGA-14-0786-01	TCGA-02-0007-01	TCGA-06-0211-02	TCGA-06-0210-01	TCGA-12-0826-01	TCGA-06-0122-01	TCGA-12-0828-01	TCGA-02-0052-01	TCGA-06-0129-01	TCGA-06-0190-01	TCGA-02-0011-01	TCGA-06-0190-02	TCGA-02-0069-01	TCGA-06-0126-01	TCGA-02-0107-01	TCGA-02-0037-01	TCGA-06-0128-01	TCGA-06-0939-01	TCGA-12-0819-01	TCGA-16-0850-01	TCGA-02-0003-01	TCGA-19-0963-01	TCGA-19-0957-01	TCGA-14-0865-01	TCGA-06-0119-01	TCGA-14-0790-01	TCGA-06-0878-01	TCGA-02-0055-01	TCGA-02-0083-01	TCGA-06-0155-01	TCGA-06-0879-01	TCGA-02-0034-01	TCGA-28-2510-01	TCGA-02-0071-01	TCGA-02-0080-01	TCGA-06-0210-02	TCGA-02-0009-01	TCGA-02-0099-01	TCGA-02-0064-01	TCGA-14-0740-01	TCGA-12-0820-01	TCGA-02-0006-01	TCGA-06-0650-01	TCGA-02-0060-01	TCGA-16-0849-01	TCGA-19-0962-01	TCGA-06-0152-01	TCGA-12-0670-01	TCGA-02-0054-01	TCGA-12-0829-01	TCGA-28-2501-01	TCGA-06-0139-01	TCGA-16-1048-01	TCGA-06-0143-01	TCGA-02-0046-01	TCGA-19-0955-01	TCGA-14-0781-01	TCGA-02-0027-01

public/gbm_tcga_pan_can_atlas_2018/case_lists/cases_methylation_hm450.txt

@@ -0,0 +1,6 @@
+cancer_study_identifier: gbm_tcga_pan_can_atlas_2018
+stable_id: gbm_tcga_pan_can_atlas_2018_methylation_hm450
+case_list_name: Samples with methylation data (HM450)
+case_list_description: Samples with methylation (HM450) data (146 samples)
+case_list_category: all_cases_with_methylation_data
+case_list_ids: TCGA-06-0125-01	TCGA-06-0125-02	TCGA-06-0152-01	TCGA-06-0171-01	TCGA-06-0171-02	TCGA-06-0190-01	TCGA-06-0190-02	TCGA-06-0210-01	TCGA-06-0210-02	TCGA-06-0211-01	TCGA-06-0211-02	TCGA-06-0221-01	TCGA-06-0221-02	TCGA-06-0650-01	TCGA-06-1804-01	TCGA-06-1806-01	TCGA-06-5408-01	TCGA-06-5410-01	TCGA-06-5411-01	TCGA-06-5412-01	TCGA-06-5413-01	TCGA-06-5414-01	TCGA-06-5415-01	TCGA-06-5416-01	TCGA-06-5417-01	TCGA-06-5418-01	TCGA-06-5856-01	TCGA-06-5858-01	TCGA-06-5859-01	TCGA-06-6388-01	TCGA-06-6389-01	TCGA-06-6390-01	TCGA-06-6693-01	TCGA-06-6694-01	TCGA-06-6695-01	TCGA-06-6697-01	TCGA-06-6698-01	TCGA-06-6699-01	TCGA-06-6700-01	TCGA-06-6701-01	TCGA-06-A5U0-01	TCGA-06-A5U1-01	TCGA-06-A6S0-01	TCGA-06-A6S1-01	TCGA-06-A7TK-01	TCGA-06-A7TL-01	TCGA-12-5295-01	TCGA-12-5299-01	TCGA-12-5301-01	TCGA-14-0736-01	TCGA-14-0740-01	TCGA-14-0781-01	TCGA-14-0862-01	TCGA-14-1034-02	TCGA-14-1043-01	TCGA-14-1395-01	TCGA-14-1402-01	TCGA-14-1450-01	TCGA-15-1444-01	TCGA-19-0957-01	TCGA-19-1389-01	TCGA-19-4065-01	TCGA-19-5947-01	TCGA-19-5950-01	TCGA-19-5951-01	TCGA-19-5952-01	TCGA-19-5953-01	TCGA-19-5954-01	TCGA-19-5955-01	TCGA-19-5956-01	TCGA-19-5958-01	TCGA-19-5959-01	TCGA-19-5960-01	TCGA-19-A60I-01	TCGA-19-A6J4-01	TCGA-19-A6J5-01	TCGA-26-1442-01	TCGA-26-5132-01	TCGA-26-5133-01	TCGA-26-5134-01	TCGA-26-5135-01	TCGA-26-5136-01	TCGA-26-5139-01	TCGA-26-6173-01	TCGA-26-6174-01	TCGA-26-A7UX-01	TCGA-28-2501-01	TCGA-28-2510-01	TCGA-28-5204-01	TCGA-28-5207-01	TCGA-28-5208-01	TCGA-28-5209-01	TCGA-28-5211-01	TCGA-28-5213-01	TCGA-28-5214-01	TCGA-28-5215-01	TCGA-28-5216-01	TCGA-28-5218-01	TCGA-28-5219-01	TCGA-28-5220-01	TCGA-28-6450-01	TCGA-32-1979-01	TCGA-32-1980-01	TCGA-32-5222-01	TCGA-41-5651-01	TCGA-41-6646-01	TCGA-4W-AA9R-01	TCGA-4W-AA9S-01	TCGA-4W-AA9T-01	TCGA-74-6573-01	TCGA-74-6575-01	TCGA-74-6577-01	TCGA-74-6578-01	TCGA-74-6581-01	TCGA-74-6584-01	TCGA-76-4925-01	TCGA-76-4926-01	TCGA-76-4927-01	TCGA-76-4928-01	TCGA-76-4929-01	TCGA-76-4931-01	TCGA-76-4932-01	TCGA-76-4934-01	TCGA-76-4935-01	TCGA-76-6191-01	TCGA-76-6192-01	TCGA-76-6193-01	TCGA-76-6280-01	TCGA-76-6282-01	TCGA-76-6283-01	TCGA-76-6285-01	TCGA-76-6286-01	TCGA-76-6656-01	TCGA-76-6657-01	TCGA-76-6660-01	TCGA-76-6661-01	TCGA-76-6662-01	TCGA-76-6663-01	TCGA-76-6664-01	TCGA-81-5910-01	TCGA-81-5911-01	TCGA-87-5896-01	TCGA-OX-A56R-01	TCGA-RR-A6KA-01	TCGA-RR-A6KB-01	TCGA-RR-A6KC-01