Merge pull request #1975 from cBioPortal/gene_table_update_v5

Gene Table Update v5 : migrate outdated gene symbols in data files
cBioPortal · Dec 15, 2023 · 6929e33 · 6929e33
2 parents e95355a + 66ab1c7
commit 6929e33
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diff --git a/public/acc_tcga/data_methylation_hm450.txt b/public/acc_tcga/data_methylation_hm450.txt
diff --git a/public/acc_tcga/data_mrna_seq_v2_rsem.txt b/public/acc_tcga/data_mrna_seq_v2_rsem.txt
diff --git a/public/acc_tcga/data_mrna_seq_v2_rsem_zscores_ref_all_samples.txt b/public/acc_tcga/data_mrna_seq_v2_rsem_zscores_ref_all_samples.txt
diff --git a/public/acc_tcga/data_mrna_seq_v2_rsem_zscores_ref_diploid_samples.txt b/public/acc_tcga/data_mrna_seq_v2_rsem_zscores_ref_diploid_samples.txt
diff --git a/public/acc_tcga/data_mutations.txt b/public/acc_tcga/data_mutations.txt
diff --git a/public/acc_tcga_pan_can_atlas_2018/data_cna.txt b/public/acc_tcga_pan_can_atlas_2018/data_cna.txt
diff --git a/public/acc_tcga_pan_can_atlas_2018/data_log2_cna.txt b/public/acc_tcga_pan_can_atlas_2018/data_log2_cna.txt
diff --git a/public/acc_tcga_pan_can_atlas_2018/data_mrna_seq_v2_rsem.txt b/public/acc_tcga_pan_can_atlas_2018/data_mrna_seq_v2_rsem.txt
diff --git a/public/acc_tcga_pan_can_atlas_2018/data_mrna_seq_v2_rsem_zscores_ref_all_samples.txt b/public/acc_tcga_pan_can_atlas_2018/data_mrna_seq_v2_rsem_zscores_ref_all_samples.txt
diff --git a/public/acc_tcga_pan_can_atlas_2018/data_mrna_seq_v2_rsem_zscores_ref_diploid_samples.txt b/public/acc_tcga_pan_can_atlas_2018/data_mrna_seq_v2_rsem_zscores_ref_diploid_samples.txt
diff --git a/public/acyc_mda_2015/data_mutations.txt b/public/acyc_mda_2015/data_mutations.txt
diff --git a/public/acyc_mskcc_2013/data_cna.txt b/public/acyc_mskcc_2013/data_cna.txt
diff --git a/public/all_phase2_target_2018_pub/data_mrna_agilent_microarray.txt b/public/all_phase2_target_2018_pub/data_mrna_agilent_microarray.txt
diff --git a/public/all_phase2_target_2018_pub/data_mrna_agilent_microarray_zscores_ref_all_samples.txt b/public/all_phase2_target_2018_pub/data_mrna_agilent_microarray_zscores_ref_all_samples.txt
diff --git a/...c/all_phase2_target_2018_pub/data_mrna_agilent_microarray_zscores_ref_diploid_samples.txt b/...c/all_phase2_target_2018_pub/data_mrna_agilent_microarray_zscores_ref_diploid_samples.txt
diff --git a/public/all_phase2_target_2018_pub/data_mrna_seq_rpkm.txt b/public/all_phase2_target_2018_pub/data_mrna_seq_rpkm.txt
diff --git a/public/all_phase2_target_2018_pub/data_mrna_seq_rpkm_zscores_ref_all_samples.txt b/public/all_phase2_target_2018_pub/data_mrna_seq_rpkm_zscores_ref_all_samples.txt
diff --git a/public/all_phase2_target_2018_pub/data_mrna_seq_rpkm_zscores_ref_diploid_samples.txt b/public/all_phase2_target_2018_pub/data_mrna_seq_rpkm_zscores_ref_diploid_samples.txt
diff --git a/public/aml_target_2018_pub/data_mrna_agilent_microarray.txt b/public/aml_target_2018_pub/data_mrna_agilent_microarray.txt
diff --git a/public/aml_target_2018_pub/data_mrna_agilent_microarray_zscores_ref_all_samples.txt b/public/aml_target_2018_pub/data_mrna_agilent_microarray_zscores_ref_all_samples.txt
diff --git a/public/aml_target_2018_pub/data_mrna_seq_rpkm.txt b/public/aml_target_2018_pub/data_mrna_seq_rpkm.txt
diff --git a/public/aml_target_2018_pub/data_mrna_seq_rpkm_zscores_ref_all_samples.txt b/public/aml_target_2018_pub/data_mrna_seq_rpkm_zscores_ref_all_samples.txt
diff --git a/public/angs_painter_2020/data_cna.txt b/public/angs_painter_2020/data_cna.txt
diff --git a/public/angs_project_painter_2018/data_cna.txt b/public/angs_project_painter_2018/data_cna.txt
diff --git a/public/blca_cornell_2016/data_cna.txt b/public/blca_cornell_2016/data_cna.txt
diff --git a/public/blca_msk_tcga_2020/data_cna.txt b/public/blca_msk_tcga_2020/data_cna.txt
diff --git a/public/blca_msk_tcga_2020/data_log2_cna.txt b/public/blca_msk_tcga_2020/data_log2_cna.txt
diff --git a/public/blca_msk_tcga_2020/data_mrna_seq_v2_rsem.txt b/public/blca_msk_tcga_2020/data_mrna_seq_v2_rsem.txt
diff --git a/public/blca_msk_tcga_2020/data_mrna_seq_v2_rsem_zscores_ref_all_samples.txt b/public/blca_msk_tcga_2020/data_mrna_seq_v2_rsem_zscores_ref_all_samples.txt
diff --git a/public/blca_msk_tcga_2020/data_mrna_seq_v2_rsem_zscores_ref_diploid_samples.txt b/public/blca_msk_tcga_2020/data_mrna_seq_v2_rsem_zscores_ref_diploid_samples.txt
diff --git a/public/blca_mskcc_solit_2012/data_methylation_hm27.txt b/public/blca_mskcc_solit_2012/data_methylation_hm27.txt
diff --git a/public/blca_tcga/data_methylation_hm450.txt b/public/blca_tcga/data_methylation_hm450.txt
diff --git a/public/blca_tcga/data_mrna_seq_v2_rsem.txt b/public/blca_tcga/data_mrna_seq_v2_rsem.txt
diff --git a/public/blca_tcga/data_mrna_seq_v2_rsem_zscores_ref_all_samples.txt b/public/blca_tcga/data_mrna_seq_v2_rsem_zscores_ref_all_samples.txt
diff --git a/public/blca_tcga/data_mrna_seq_v2_rsem_zscores_ref_diploid_samples.txt b/public/blca_tcga/data_mrna_seq_v2_rsem_zscores_ref_diploid_samples.txt
diff --git a/public/blca_tcga/data_mutations.txt b/public/blca_tcga/data_mutations.txt
diff --git a/public/blca_tcga_pan_can_atlas_2018/data_cna.txt b/public/blca_tcga_pan_can_atlas_2018/data_cna.txt
diff --git a/public/blca_tcga_pan_can_atlas_2018/data_log2_cna.txt b/public/blca_tcga_pan_can_atlas_2018/data_log2_cna.txt
diff --git a/public/blca_tcga_pan_can_atlas_2018/data_mrna_seq_v2_rsem.txt b/public/blca_tcga_pan_can_atlas_2018/data_mrna_seq_v2_rsem.txt
diff --git a/public/blca_tcga_pan_can_atlas_2018/data_mrna_seq_v2_rsem_zscores_ref_all_samples.txt b/public/blca_tcga_pan_can_atlas_2018/data_mrna_seq_v2_rsem_zscores_ref_all_samples.txt
diff --git a/public/blca_tcga_pan_can_atlas_2018/data_mrna_seq_v2_rsem_zscores_ref_diploid_samples.txt b/public/blca_tcga_pan_can_atlas_2018/data_mrna_seq_v2_rsem_zscores_ref_diploid_samples.txt
diff --git a/public/blca_tcga_pan_can_atlas_2018/data_mrna_seq_v2_rsem_zscores_ref_normal_samples.txt b/public/blca_tcga_pan_can_atlas_2018/data_mrna_seq_v2_rsem_zscores_ref_normal_samples.txt
diff --git a/public/blca_tcga_pub/data_cna.txt b/public/blca_tcga_pub/data_cna.txt
diff --git a/public/blca_tcga_pub/data_linear_cna.txt b/public/blca_tcga_pub/data_linear_cna.txt
diff --git a/public/blca_tcga_pub/data_methylation_hm450.txt b/public/blca_tcga_pub/data_methylation_hm450.txt
diff --git a/public/blca_tcga_pub/data_mrna_seq_v2_rsem.txt b/public/blca_tcga_pub/data_mrna_seq_v2_rsem.txt
diff --git a/public/blca_tcga_pub/data_mrna_seq_v2_rsem_zscores_ref_all_samples.txt b/public/blca_tcga_pub/data_mrna_seq_v2_rsem_zscores_ref_all_samples.txt
diff --git a/public/blca_tcga_pub/data_mrna_seq_v2_rsem_zscores_ref_diploid_samples.txt b/public/blca_tcga_pub/data_mrna_seq_v2_rsem_zscores_ref_diploid_samples.txt
diff --git a/public/blca_tcga_pub_2017/data_methylation_hm450.txt b/public/blca_tcga_pub_2017/data_methylation_hm450.txt
diff --git a/public/blca_tcga_pub_2017/data_mrna_seq_v2_rsem.txt b/public/blca_tcga_pub_2017/data_mrna_seq_v2_rsem.txt
diff --git a/public/blca_tcga_pub_2017/data_mrna_seq_v2_rsem_zscores_ref_all_samples.txt b/public/blca_tcga_pub_2017/data_mrna_seq_v2_rsem_zscores_ref_all_samples.txt
diff --git a/public/blca_tcga_pub_2017/data_mrna_seq_v2_rsem_zscores_ref_diploid_samples.txt b/public/blca_tcga_pub_2017/data_mrna_seq_v2_rsem_zscores_ref_diploid_samples.txt
diff --git a/public/brain_cptac_2020/data_cna.txt b/public/brain_cptac_2020/data_cna.txt
diff --git a/public/brain_cptac_2020/data_linear_cna.txt b/public/brain_cptac_2020/data_linear_cna.txt
diff --git a/public/brca_bccrc_xenograft_2014/data_log2_cna.txt b/public/brca_bccrc_xenograft_2014/data_log2_cna.txt
diff --git a/public/brca_bccrc_xenograft_2014/data_mutations.txt b/public/brca_bccrc_xenograft_2014/data_mutations.txt
diff --git a/public/brca_cptac_2020/data_cna.txt b/public/brca_cptac_2020/data_cna.txt
diff --git a/public/brca_cptac_2020/data_log2_cna.txt b/public/brca_cptac_2020/data_log2_cna.txt
diff --git a/public/brca_cptac_2020/data_mrna_seq_fpkm.txt b/public/brca_cptac_2020/data_mrna_seq_fpkm.txt
diff --git a/public/brca_cptac_2020/data_mrna_seq_fpkm_zscores_ref_all_samples.txt b/public/brca_cptac_2020/data_mrna_seq_fpkm_zscores_ref_all_samples.txt
diff --git a/public/brca_igr_2015/data_cna.txt b/public/brca_igr_2015/data_cna.txt
diff --git a/public/brca_igr_2015/data_mutations.txt b/public/brca_igr_2015/data_mutations.txt
diff --git a/public/brca_mbcproject_2022/data_cna.txt b/public/brca_mbcproject_2022/data_cna.txt
diff --git a/public/brca_mbcproject_2022/data_mrna_seq_v2_rsem.txt b/public/brca_mbcproject_2022/data_mrna_seq_v2_rsem.txt
diff --git a/public/brca_mbcproject_2022/data_mrna_seq_v2_rsem_zscores_ref_all_samples.txt b/public/brca_mbcproject_2022/data_mrna_seq_v2_rsem_zscores_ref_all_samples.txt
diff --git a/public/brca_mbcproject_wagle_2017/data_cna.txt b/public/brca_mbcproject_wagle_2017/data_cna.txt