Merge pull request #1916 from cBioPortal/missing_public_studies

Adding studies missing from Datahub.
cBioPortal · Nov 27, 2023 · 7331045 · 7331045
2 parents a2007fc + cd593ce
commit 7331045
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diff --git a/public/difg_msk_2023/case_lists/cases_all.txt b/public/difg_msk_2023/case_lists/cases_all.txt
@@ -0,0 +1,6 @@
+cancer_study_identifier: difg_msk_2023
+stable_id: difg_msk_2023_all
+case_list_name: All samples
+case_list_description: All samples (73 samples)
+case_list_category: all_cases_in_study
+case_list_ids: P-0027983-T01-IM6	P-0020640-T01-IM6	P-0004578-T01-IM5	s_C_F8V4TK_P001_d	P-0004073-T01-IM5	P-0018691-T01-IM6	P-0009193-T02-IM6	P-0003333-T01-IM5	P-0003669-T01-IM5	P-0002298-T02-IM6	P-0014647-T01-IM6	P-0013455-T01-IM5	P-0000896-T01-IM3	s_C_CY9JEA_P001_d	P-0033694-T01-IM6	P-0044250-T01-IM6	P-0013048-T01-IM5	P-0008035-T01-IM5	P-0004721-T01-IM5	P-0005609-T01-IM5	P-0034974-T01-IM6	P-0021039-T01-IM6	P-0005789-T01-IM5	P-0023548-T01-IM6	P-0032516-T01-IM6	P-0009398-T01-IM5	P-0028714-T01-IM6	P-0008531-T02-IM5	s_C_AXF6FN_P001_d	P-0011257-T01-IM5	P-0009511-T03-IM6	P-0007013-T01-IM5	P-0001412-T01-IM3	P-0009046-T01-IM5	P-0002963-T01-IM3	P-0000749-T02-IM6	P-0000486-T01-IM3	P-0020016-T01-IM6	P-0029104-T01-IM6	P-0008725-T01-IM5	s_C_0TNEU9_R001_d	s_C_DK54CV_P002_d	P-0021158-T01-IM6	s_C_KKE2CK_P001_d	s_C_L0WLCX_R001_d	P-0025717-T01-IM6	P-0001250-T01-IM3	P-0004304-T01-IM5	P-0004319-T01-IM5	P-0020686-T01-IM6	P-0017301-T01-IM6	P-0010859-T01-IM5	P-0013243-T03-IM6	P-0003833-T02-IM6	P-0031736-T01-IM6	P-0018124-T01-IM6	P-0020250-T02-IM6	P-0005951-T01-IM5	P-0001279-T01-IM3	P-0020522-T01-IM6	P-0014865-T01-IM6	P-0016383-T01-IM6	P-0005138-T01-IM5	P-0009685-T01-IM5	P-0006678-T01-IM5	P-0028357-T01-IM6	P-0002043-T01-IM3	P-0002981-T02-IM5	P-0032959-T01-IM6	P-0024164-T01-IM6	P-0003339-T01-IM5	P-0003065-T01-IM5	s_C_D22E00_P001_d
diff --git a/public/difg_msk_2023/case_lists/cases_cna.txt b/public/difg_msk_2023/case_lists/cases_cna.txt
@@ -0,0 +1,6 @@
+cancer_study_identifier: difg_msk_2023
+stable_id: difg_msk_2023_cna
+case_list_name: Samples with CNA data
+case_list_description: Samples with CNA data (73 samples)
+case_list_category: all_cases_with_cna_data
+case_list_ids: P-0027983-T01-IM6	P-0020640-T01-IM6	P-0004578-T01-IM5	s_C_F8V4TK_P001_d	P-0004073-T01-IM5	P-0018691-T01-IM6	P-0009193-T02-IM6	P-0003333-T01-IM5	P-0003669-T01-IM5	P-0002298-T02-IM6	P-0014647-T01-IM6	P-0013455-T01-IM5	P-0000896-T01-IM3	s_C_CY9JEA_P001_d	P-0033694-T01-IM6	P-0044250-T01-IM6	P-0013048-T01-IM5	P-0008035-T01-IM5	P-0004721-T01-IM5	P-0005609-T01-IM5	P-0034974-T01-IM6	P-0021039-T01-IM6	P-0005789-T01-IM5	P-0023548-T01-IM6	P-0032516-T01-IM6	P-0009398-T01-IM5	P-0028714-T01-IM6	P-0008531-T02-IM5	s_C_AXF6FN_P001_d	P-0011257-T01-IM5	P-0009511-T03-IM6	P-0007013-T01-IM5	P-0001412-T01-IM3	P-0009046-T01-IM5	P-0002963-T01-IM3	P-0000749-T02-IM6	P-0000486-T01-IM3	P-0020016-T01-IM6	P-0029104-T01-IM6	P-0008725-T01-IM5	s_C_0TNEU9_R001_d	s_C_DK54CV_P002_d	P-0021158-T01-IM6	s_C_KKE2CK_P001_d	s_C_L0WLCX_R001_d	P-0025717-T01-IM6	P-0001250-T01-IM3	P-0004304-T01-IM5	P-0004319-T01-IM5	P-0020686-T01-IM6	P-0017301-T01-IM6	P-0010859-T01-IM5	P-0013243-T03-IM6	P-0003833-T02-IM6	P-0031736-T01-IM6	P-0018124-T01-IM6	P-0020250-T02-IM6	P-0005951-T01-IM5	P-0001279-T01-IM3	P-0020522-T01-IM6	P-0014865-T01-IM6	P-0016383-T01-IM6	P-0005138-T01-IM5	P-0009685-T01-IM5	P-0006678-T01-IM5	P-0028357-T01-IM6	P-0002043-T01-IM3	P-0002981-T02-IM5	P-0032959-T01-IM6	P-0024164-T01-IM6	P-0003339-T01-IM5	P-0003065-T01-IM5	s_C_D22E00_P001_d
diff --git a/public/difg_msk_2023/case_lists/cases_cnaseq.txt b/public/difg_msk_2023/case_lists/cases_cnaseq.txt
@@ -0,0 +1,6 @@
+cancer_study_identifier: difg_msk_2023
+stable_id: difg_msk_2023_cnaseq
+case_list_name: Samples with mutation and CNA data
+case_list_description: Samples with mutation and CNA data (73 samples)
+case_list_category: all_cases_with_mutation_and_cna_data
+case_list_ids: P-0027983-T01-IM6	P-0004578-T01-IM5	P-0020640-T01-IM6	s_C_F8V4TK_P001_d	P-0004073-T01-IM5	P-0018691-T01-IM6	P-0009193-T02-IM6	P-0003333-T01-IM5	P-0003669-T01-IM5	P-0002298-T02-IM6	P-0014647-T01-IM6	P-0013455-T01-IM5	P-0000896-T01-IM3	s_C_CY9JEA_P001_d	P-0044250-T01-IM6	P-0033694-T01-IM6	P-0013048-T01-IM5	P-0008035-T01-IM5	P-0004721-T01-IM5	P-0005609-T01-IM5	P-0034974-T01-IM6	P-0021039-T01-IM6	P-0005789-T01-IM5	P-0023548-T01-IM6	P-0032516-T01-IM6	P-0009398-T01-IM5	P-0028714-T01-IM6	P-0008531-T02-IM5	s_C_AXF6FN_P001_d	P-0011257-T01-IM5	P-0007013-T01-IM5	P-0009511-T03-IM6	P-0001412-T01-IM3	P-0009046-T01-IM5	P-0002963-T01-IM3	P-0000749-T02-IM6	P-0000486-T01-IM3	P-0029104-T01-IM6	P-0020016-T01-IM6	P-0008725-T01-IM5	s_C_0TNEU9_R001_d	s_C_DK54CV_P002_d	P-0021158-T01-IM6	s_C_KKE2CK_P001_d	s_C_L0WLCX_R001_d	P-0025717-T01-IM6	P-0001250-T01-IM3	P-0004304-T01-IM5	P-0004319-T01-IM5	P-0020686-T01-IM6	P-0017301-T01-IM6	P-0010859-T01-IM5	P-0013243-T03-IM6	P-0003833-T02-IM6	P-0031736-T01-IM6	P-0018124-T01-IM6	P-0020250-T02-IM6	P-0005951-T01-IM5	P-0001279-T01-IM3	P-0020522-T01-IM6	P-0014865-T01-IM6	P-0016383-T01-IM6	P-0005138-T01-IM5	P-0009685-T01-IM5	P-0006678-T01-IM5	P-0028357-T01-IM6	P-0002043-T01-IM3	P-0002981-T02-IM5	P-0032959-T01-IM6	P-0024164-T01-IM6	P-0003339-T01-IM5	P-0003065-T01-IM5	s_C_D22E00_P001_d
diff --git a/public/difg_msk_2023/case_lists/cases_sequenced.txt b/public/difg_msk_2023/case_lists/cases_sequenced.txt
@@ -0,0 +1,6 @@
+cancer_study_identifier: difg_msk_2023
+stable_id: difg_msk_2023_sequenced
+case_list_name: Samples with mutation data
+case_list_description: Samples with mutation data (73 samples)
+case_list_category: all_cases_with_mutation_data
+case_list_ids: P-0027983-T01-IM6	P-0004578-T01-IM5	P-0020640-T01-IM6	s_C_F8V4TK_P001_d	P-0004073-T01-IM5	P-0018691-T01-IM6	P-0009193-T02-IM6	P-0003333-T01-IM5	P-0003669-T01-IM5	P-0002298-T02-IM6	P-0014647-T01-IM6	P-0013455-T01-IM5	P-0000896-T01-IM3	s_C_CY9JEA_P001_d	P-0044250-T01-IM6	P-0033694-T01-IM6	P-0013048-T01-IM5	P-0008035-T01-IM5	P-0004721-T01-IM5	P-0005609-T01-IM5	P-0034974-T01-IM6	P-0021039-T01-IM6	P-0005789-T01-IM5	P-0023548-T01-IM6	P-0032516-T01-IM6	P-0009398-T01-IM5	P-0028714-T01-IM6	P-0008531-T02-IM5	s_C_AXF6FN_P001_d	P-0011257-T01-IM5	P-0007013-T01-IM5	P-0009511-T03-IM6	P-0001412-T01-IM3	P-0009046-T01-IM5	P-0002963-T01-IM3	P-0000749-T02-IM6	P-0000486-T01-IM3	P-0029104-T01-IM6	P-0020016-T01-IM6	P-0008725-T01-IM5	s_C_0TNEU9_R001_d	s_C_DK54CV_P002_d	P-0021158-T01-IM6	s_C_KKE2CK_P001_d	s_C_L0WLCX_R001_d	P-0025717-T01-IM6	P-0001250-T01-IM3	P-0004304-T01-IM5	P-0004319-T01-IM5	P-0020686-T01-IM6	P-0017301-T01-IM6	P-0010859-T01-IM5	P-0013243-T03-IM6	P-0003833-T02-IM6	P-0031736-T01-IM6	P-0018124-T01-IM6	P-0020250-T02-IM6	P-0005951-T01-IM5	P-0001279-T01-IM3	P-0020522-T01-IM6	P-0014865-T01-IM6	P-0016383-T01-IM6	P-0005138-T01-IM5	P-0009685-T01-IM5	P-0006678-T01-IM5	P-0028357-T01-IM6	P-0002043-T01-IM3	P-0002981-T02-IM5	P-0032959-T01-IM6	P-0024164-T01-IM6	P-0003339-T01-IM5	P-0003065-T01-IM5	s_C_D22E00_P001_d
diff --git a/public/difg_msk_2023/case_lists/cases_sv.txt b/public/difg_msk_2023/case_lists/cases_sv.txt
@@ -0,0 +1,6 @@
+cancer_study_identifier: difg_msk_2023
+stable_id: difg_msk_2023_sv
+case_list_name: Samples with SV data
+case_list_description: All samples with SV data (73 samples)
+case_list_category: all_cases_with_sv_data
+case_list_ids: 	P-0027983-T01-IM6	P-0020640-T01-IM6	P-0004578-T01-IM5	s_C_F8V4TK_P001_d	P-0004073-T01-IM5	P-0018691-T01-IM6	P-0009193-T02-IM6	P-0003333-T01-IM5	P-0003669-T01-IM5	P-0002298-T02-IM6	P-0014647-T01-IM6	P-0013455-T01-IM5	P-0000896-T01-IM3	s_C_CY9JEA_P001_d	P-0033694-T01-IM6	P-0044250-T01-IM6	P-0013048-T01-IM5	P-0008035-T01-IM5	P-0004721-T01-IM5	P-0005609-T01-IM5	P-0034974-T01-IM6	P-0021039-T01-IM6	P-0005789-T01-IM5	P-0023548-T01-IM6	P-0032516-T01-IM6	P-0009398-T01-IM5	P-0028714-T01-IM6	P-0008531-T02-IM5	s_C_AXF6FN_P001_d	P-0011257-T01-IM5	P-0009511-T03-IM6	P-0007013-T01-IM5	P-0001412-T01-IM3	P-0009046-T01-IM5	P-0002963-T01-IM3	P-0000749-T02-IM6	P-0000486-T01-IM3	P-0020016-T01-IM6	P-0029104-T01-IM6	P-0008725-T01-IM5	s_C_0TNEU9_R001_d	s_C_DK54CV_P002_d	P-0021158-T01-IM6	s_C_KKE2CK_P001_d	s_C_L0WLCX_R001_d	P-0025717-T01-IM6	P-0001250-T01-IM3	P-0004304-T01-IM5	P-0004319-T01-IM5	P-0020686-T01-IM6	P-0017301-T01-IM6	P-0010859-T01-IM5	P-0013243-T03-IM6	P-0003833-T02-IM6	P-0031736-T01-IM6	P-0018124-T01-IM6	P-0020250-T02-IM6	P-0005951-T01-IM5	P-0001279-T01-IM3	P-0020522-T01-IM6	P-0014865-T01-IM6	P-0016383-T01-IM6	P-0005138-T01-IM5	P-0009685-T01-IM5	P-0006678-T01-IM5	P-0028357-T01-IM6	P-0002043-T01-IM3	P-0002981-T02-IM5	P-0032959-T01-IM6	P-0024164-T01-IM6	P-0003339-T01-IM5	P-0003065-T01-IM5	s_C_D22E00_P001_d
diff --git a/public/difg_msk_2023/data_clinical_patient.txt b/public/difg_msk_2023/data_clinical_patient.txt
diff --git a/public/difg_msk_2023/data_clinical_sample.txt b/public/difg_msk_2023/data_clinical_sample.txt
diff --git a/public/difg_msk_2023/data_cna.txt b/public/difg_msk_2023/data_cna.txt
diff --git a/public/difg_msk_2023/data_cna_hg19.seg b/public/difg_msk_2023/data_cna_hg19.seg
diff --git a/public/difg_msk_2023/data_gene_panel_matrix.txt b/public/difg_msk_2023/data_gene_panel_matrix.txt
diff --git a/public/difg_msk_2023/data_mutations.txt b/public/difg_msk_2023/data_mutations.txt
diff --git a/public/difg_msk_2023/data_sv.txt b/public/difg_msk_2023/data_sv.txt
diff --git a/public/difg_msk_2023/data_timeline.txt b/public/difg_msk_2023/data_timeline.txt
diff --git a/public/difg_msk_2023/meta_clinical_patient.txt b/public/difg_msk_2023/meta_clinical_patient.txt
@@ -0,0 +1,4 @@
+cancer_study_identifier: difg_msk_2023
+genetic_alteration_type: CLINICAL
+datatype: PATIENT_ATTRIBUTES
+data_filename: data_clinical_patient.txt
diff --git a/public/difg_msk_2023/meta_clinical_sample.txt b/public/difg_msk_2023/meta_clinical_sample.txt
@@ -0,0 +1,4 @@
+cancer_study_identifier: difg_msk_2023
+genetic_alteration_type: CLINICAL
+datatype: SAMPLE_ATTRIBUTES
+data_filename: data_clinical_sample.txt
diff --git a/public/difg_msk_2023/meta_cna.txt b/public/difg_msk_2023/meta_cna.txt
@@ -0,0 +1,8 @@
+cancer_study_identifier: difg_msk_2023
+genetic_alteration_type: COPY_NUMBER_ALTERATION
+show_profile_in_analysis_tab: true
+profile_name: Copy Number Alterations
+profile_description: Copy number alterations from targeted sequencing via MK-IMPACT on Illumina HiSeq sequencers.
+datatype: DISCRETE
+data_filename: data_cna.txt
+stable_id: gistic
diff --git a/public/difg_msk_2023/meta_cna_hg19_seg.txt b/public/difg_msk_2023/meta_cna_hg19_seg.txt
@@ -0,0 +1,8 @@
+cancer_study_identifier: difg_msk_2023
+data_filename: data_cna_hg19.seg
+genetic_alteration_type: COPY_NUMBER_ALTERATION
+datatype: SEG
+show_profile_in_analysis_tab: FALSE
+profile_name: Segment data values
+description: Somatic CNA data (copy number ratio from tumor samples minus ratio from matched normals) from TCGA.
+reference_genome_id: hg19
diff --git a/public/difg_msk_2023/meta_gene_panel_matrix.txt b/public/difg_msk_2023/meta_gene_panel_matrix.txt
@@ -0,0 +1,4 @@
+cancer_study_identifier: difg_msk_2023
+data_filename: data_gene_panel_matrix.txt
+genetic_alteration_type: GENE_PANEL_MATRIX
+datatype: GENE_PANEL_MATRIX
diff --git a/public/difg_msk_2023/meta_mutations.txt b/public/difg_msk_2023/meta_mutations.txt
@@ -0,0 +1,8 @@
+cancer_study_identifier: difg_msk_2023
+genetic_alteration_type: MUTATION_EXTENDED
+datatype: MAF
+profile_name: Mutations
+profile_description: Mutation data from targeted sequencing of 73 diffuse gliomas and their matched normals via MSK-IMPACT.
+show_profile_in_analysis_tab: true
+data_filename: data_mutations.txt
+stable_id: mutations
diff --git a/public/difg_msk_2023/meta_study.txt b/public/difg_msk_2023/meta_study.txt
@@ -0,0 +1,4 @@
+type_of_cancer: difg
+cancer_study_identifier: difg_msk_2023
+name: Diffuse Glioma (MSK, 2023)
+description: Targeted sequencing of 73 diffuse gliomas and their matched normal pairs via MSK-IMPACT platforms. The data is available on <a href="https://www.synapse.org/#!Synapse:syn52658621/wiki/624065">Synapse</a>.
diff --git a/public/difg_msk_2023/meta_sv.txt b/public/difg_msk_2023/meta_sv.txt
@@ -0,0 +1,8 @@
+cancer_study_identifier: difg_msk_2023
+genetic_alteration_type: STRUCTURAL_VARIANT
+datatype: SV
+profile_name: Structural Variants
+profile_description: Structural Variants
+show_profile_in_analysis_tab: true
+data_filename: data_sv.txt
+stable_id: structural_variants
diff --git a/public/difg_msk_2023/meta_timeline.txt b/public/difg_msk_2023/meta_timeline.txt
@@ -0,0 +1,4 @@
+cancer_study_identifier: difg_msk_2023
+genetic_alteration_type: CLINICAL
+datatype: TIMELINE
+data_filename: data_timeline.txt
diff --git a/public/egc_msk_2023/case_lists/cases_all.txt b/public/egc_msk_2023/case_lists/cases_all.txt
diff --git a/public/egc_msk_2023/case_lists/cases_cna.txt b/public/egc_msk_2023/case_lists/cases_cna.txt
diff --git a/public/egc_msk_2023/case_lists/cases_cnaseq.txt b/public/egc_msk_2023/case_lists/cases_cnaseq.txt
diff --git a/public/egc_msk_2023/case_lists/cases_sequenced.txt b/public/egc_msk_2023/case_lists/cases_sequenced.txt
diff --git a/public/egc_msk_2023/case_lists/cases_sv.txt b/public/egc_msk_2023/case_lists/cases_sv.txt
diff --git a/public/egc_msk_2023/data_clinical_patient.txt b/public/egc_msk_2023/data_clinical_patient.txt
diff --git a/public/egc_msk_2023/data_clinical_sample.txt b/public/egc_msk_2023/data_clinical_sample.txt
diff --git a/public/egc_msk_2023/data_cna.txt b/public/egc_msk_2023/data_cna.txt
diff --git a/public/egc_msk_2023/data_cna_hg19.seg b/public/egc_msk_2023/data_cna_hg19.seg
diff --git a/public/egc_msk_2023/data_gene_panel_matrix.txt b/public/egc_msk_2023/data_gene_panel_matrix.txt
diff --git a/public/egc_msk_2023/data_mutations.txt b/public/egc_msk_2023/data_mutations.txt
diff --git a/public/egc_msk_2023/data_sv.txt b/public/egc_msk_2023/data_sv.txt
diff --git a/public/egc_msk_2023/meta_clinical_patient.txt b/public/egc_msk_2023/meta_clinical_patient.txt
@@ -0,0 +1,4 @@
+cancer_study_identifier: egc_msk_2023
+genetic_alteration_type: CLINICAL
+datatype: PATIENT_ATTRIBUTES
+data_filename: data_clinical_patient.txt
diff --git a/public/egc_msk_2023/meta_clinical_sample.txt b/public/egc_msk_2023/meta_clinical_sample.txt
@@ -0,0 +1,4 @@
+cancer_study_identifier: egc_msk_2023
+genetic_alteration_type: CLINICAL
+datatype: SAMPLE_ATTRIBUTES
+data_filename: data_clinical_sample.txt
diff --git a/public/egc_msk_2023/meta_cna.txt b/public/egc_msk_2023/meta_cna.txt
@@ -0,0 +1,8 @@
+cancer_study_identifier: egc_msk_2023
+genetic_alteration_type: COPY_NUMBER_ALTERATION
+datatype: DISCRETE
+data_filename: data_cna.txt
+stable_id: cna
+show_profile_in_analysis_tab: true
+profile_description: Putative copy-number calls:2.0. Values: -2 = homozygous deletion; -1 = hemizygous deletion; 0 = neutral / no change; 1 = gain; 2 = high level amplification.
+profile_name: Putative copy-number alterations
diff --git a/public/egc_msk_2023/meta_cna_hg19_seg.txt b/public/egc_msk_2023/meta_cna_hg19_seg.txt
@@ -0,0 +1,6 @@
+cancer_study_identifier: egc_msk_2023
+genetic_alteration_type: COPY_NUMBER_ALTERATION
+datatype: SEG
+reference_genome_id: hg19
+description: Somatic CNA data (copy number ratio from tumor samples minus ratio from matched normals).
+data_filename: data_cna_hg19.seg
diff --git a/public/egc_msk_2023/meta_gene_panel_matrix.txt b/public/egc_msk_2023/meta_gene_panel_matrix.txt
@@ -0,0 +1,4 @@
+cancer_study_identifier: egc_msk_2023
+genetic_alteration_type: GENE_PANEL_MATRIX
+datatype: GENE_PANEL_MATRIX
+data_filename: data_gene_panel_matrix.txt
diff --git a/public/egc_msk_2023/meta_mutations.txt b/public/egc_msk_2023/meta_mutations.txt
@@ -0,0 +1,8 @@
+cancer_study_identifier: egc_msk_2023
+genetic_alteration_type: MUTATION_EXTENDED
+datatype: MAF
+stable_id: mutations
+show_profile_in_analysis_tab: true
+profile_description: Mutation data from Targeted sequencing of 902 Esophageal and Stomach cancer samples.
+profile_name: Mutations
+data_filename: data_mutations.txt
diff --git a/public/egc_msk_2023/meta_study.txt b/public/egc_msk_2023/meta_study.txt
@@ -0,0 +1,5 @@
+type_of_cancer: stomach
+cancer_study_identifier: egc_msk_2023
+name: Esophageal/Stomach Cancer (MSK, 2023)
+short_name: EGC (MSK, 2023)
+description: Targeted sequencing of 902 Esophageal/stomach cancer patients via MSK-IMPACT.
diff --git a/public/egc_msk_2023/meta_sv.txt b/public/egc_msk_2023/meta_sv.txt
@@ -0,0 +1,8 @@
+cancer_study_identifier: egc_msk_2023
+genetic_alteration_type: STRUCTURAL_VARIANT
+datatype: SV
+stable_id: structural_variants
+show_profile_in_analysis_tab: true
+profile_name: Structural variants
+profile_description: Structural Variant Data.
+data_filename: data_sv.txt
diff --git a/public/egc_trap_ccr_msk_2023/case_lists/cases_all.txt b/public/egc_trap_ccr_msk_2023/case_lists/cases_all.txt
@@ -0,0 +1,6 @@
+cancer_study_identifier: egc_trap_ccr_msk_2023
+stable_id: egc_trap_ccr_msk_2023_all
+case_list_name: All samples
+case_list_description: All samples (64 samples)
+case_list_category: all_cases_in_study
+case_list_ids: s_C_001537_M001_d	s_C_001537_P001_d	s_C_006249_T001_d	s_C_0XNVUE_P001_d	s_C_24KL7H_M002_d	s_C_24KL7H_M003_d	s_C_24KL7H_M004_d	s_C_24KL7H_P001_d	s_C_4DRACM_P001_d	s_C_4DRACM_P002_d	s_C_6KFA86_M001_d	s_C_6KFA86_M002_d	s_C_6KFA86_P001_d	s_C_8X8RXR_M001_d	s_C_8X8RXR_M002_d	s_C_90XW9T_P001_d	s_C_90XW9T_P002_d	s_C_942XVY_P001_d	s_C_942XVY_P002_d	s_C_9C61FE_P001_d	s_C_9MW4C4_P001_d	s_C_AFJFUA_M001_d	s_C_AFJFUA_P001_d	s_C_CHJEU0_P001_d	s_C_CHJEU0_P002_d	s_C_CHJEU0_P003_d	s_C_D7T5X7_M001_d	s_C_D7T5X7_P001_d	s_C_FA8UAX_M001_d	s_C_FM7MJC_P001_d	s_C_FM7MJC_P002_d	s_C_H7FA1V_M001_d	s_C_HTC215_P001_d	s_C_J7M1CK_M001_d	s_C_J7M1CK_P001_d	s_C_J7M1CK_P002_d	s_C_JWP2DW_M001_d	s_C_JWP2DW_P001_d	s_C_M782KN_P001_d	s_C_N7WDUD_P001_d	s_C_N7WDUD_P002_d	s_C_PX5NMM_P001_d	s_C_PX5NMM_P002_d	s_C_RAWHLW_M001_d	s_C_RAWHLW_P001_d	s_C_RP3UAF_P001_d	s_C_RP3UAF_P002_d	s_C_T73JEX_M001_d	s_C_UTHJ8Y_M001_d	s_C_UTHJ8Y_P001_d	s_C_UTHJ8Y_P002_d	s_C_V013DA_P001_d	s_C_VR5HC4_P001_d	s_C_VR5HC4_P002_d	s_C_W6R1AF_M001_d	s_C_W6R1AF_P001_d	s_C_WFWD8H_M001_d	s_C_WFWD8H_M002_d	s_C_WFWD8H_P001_d	s_C_WT8RMD_M001_d	s_C_WT8RMD_M002_d	s_C_XNLFXL_M001_d	s_C_XNLFXL_P001_d	s_C_Y7NXWK_M001_d
diff --git a/public/egc_trap_ccr_msk_2023/case_lists/cases_cna.txt b/public/egc_trap_ccr_msk_2023/case_lists/cases_cna.txt
@@ -0,0 +1,6 @@
+cancer_study_identifier: egc_trap_ccr_msk_2023
+stable_id: egc_trap_ccr_msk_2023_cna
+case_list_name: Samples with CNA data
+case_list_description: Samples with CNA data (64 samples)
+case_list_category: all_cases_with_cna_data
+case_list_ids: s_C_001537_M001_d	s_C_001537_P001_d	s_C_006249_T001_d	s_C_0XNVUE_P001_d	s_C_24KL7H_M002_d	s_C_24KL7H_M003_d	s_C_24KL7H_M004_d	s_C_24KL7H_P001_d	s_C_4DRACM_P001_d	s_C_6KFA86_M001_d	s_C_6KFA86_M002_d	s_C_6KFA86_P001_d	s_C_8X8RXR_M001_d	s_C_90XW9T_P001_d	s_C_90XW9T_P002_d	s_C_942XVY_P001_d	s_C_942XVY_P002_d	s_C_9C61FE_P001_d	s_C_9MW4C4_P001_d	s_C_AFJFUA_M001_d	s_C_AFJFUA_P001_d	s_C_CHJEU0_P001_d	s_C_CHJEU0_P002_d	s_C_CHJEU0_P003_d	s_C_D7T5X7_M001_d	s_C_D7T5X7_P001_d	s_C_FA8UAX_M001_d	s_C_FM7MJC_P001_d	s_C_FM7MJC_P002_d	s_C_H7FA1V_M001_d	s_C_HTC215_P001_d	s_C_J7M1CK_M001_d	s_C_J7M1CK_P001_d	s_C_J7M1CK_P002_d	s_C_JWP2DW_M001_d	s_C_JWP2DW_P001_d	s_C_M782KN_P001_d	s_C_N7WDUD_P001_d	s_C_N7WDUD_P002_d	s_C_PX5NMM_P001_d	s_C_PX5NMM_P002_d	s_C_RAWHLW_M001_d	s_C_RAWHLW_P001_d	s_C_RP3UAF_P001_d	s_C_RP3UAF_P002_d	s_C_T73JEX_M001_d	s_C_UTHJ8Y_M001_d	s_C_UTHJ8Y_P002_d	s_C_V013DA_P001_d	s_C_VR5HC4_P001_d	s_C_VR5HC4_P002_d	s_C_W6R1AF_M001_d	s_C_W6R1AF_P001_d	s_C_WFWD8H_M001_d	s_C_WFWD8H_P001_d	s_C_WT8RMD_M001_d	s_C_WT8RMD_M002_d	s_C_XNLFXL_M001_d	s_C_XNLFXL_P001_d	s_C_Y7NXWK_M001_d	s_C_UTHJ8Y_P001_d	s_C_8X8RXR_M002_d	s_C_4DRACM_P002_d	s_C_WFWD8H_M002_d
diff --git a/public/egc_trap_ccr_msk_2023/case_lists/cases_cnaseq.txt b/public/egc_trap_ccr_msk_2023/case_lists/cases_cnaseq.txt
@@ -0,0 +1,6 @@
+cancer_study_identifier: egc_trap_ccr_msk_2023
+stable_id: egc_trap_ccr_msk_2023_cnaseq
+case_list_name: Samples with mutation and CNA data
+case_list_description: Samples with mutation and CNA data (64 samples)
+case_list_category: all_cases_with_mutation_and_cna_data
+case_list_ids: s_C_001537_M001_d	s_C_001537_P001_d	s_C_006249_T001_d	s_C_0XNVUE_P001_d	s_C_24KL7H_M002_d	s_C_24KL7H_M003_d	s_C_24KL7H_M004_d	s_C_24KL7H_P001_d	s_C_4DRACM_P001_d	s_C_4DRACM_P002_d	s_C_6KFA86_M001_d	s_C_6KFA86_M002_d	s_C_6KFA86_P001_d	s_C_8X8RXR_M001_d	s_C_8X8RXR_M002_d	s_C_90XW9T_P001_d	s_C_90XW9T_P002_d	s_C_942XVY_P001_d	s_C_942XVY_P002_d	s_C_9C61FE_P001_d	s_C_9MW4C4_P001_d	s_C_AFJFUA_M001_d	s_C_AFJFUA_P001_d	s_C_CHJEU0_P001_d	s_C_CHJEU0_P002_d	s_C_CHJEU0_P003_d	s_C_D7T5X7_M001_d	s_C_D7T5X7_P001_d	s_C_FA8UAX_M001_d	s_C_FM7MJC_P001_d	s_C_FM7MJC_P002_d	s_C_H7FA1V_M001_d	s_C_HTC215_P001_d	s_C_J7M1CK_M001_d	s_C_J7M1CK_P001_d	s_C_J7M1CK_P002_d	s_C_JWP2DW_M001_d	s_C_JWP2DW_P001_d	s_C_M782KN_P001_d	s_C_N7WDUD_P001_d	s_C_N7WDUD_P002_d	s_C_PX5NMM_P001_d	s_C_PX5NMM_P002_d	s_C_RAWHLW_M001_d	s_C_RAWHLW_P001_d	s_C_RP3UAF_P001_d	s_C_RP3UAF_P002_d	s_C_T73JEX_M001_d	s_C_UTHJ8Y_M001_d	s_C_UTHJ8Y_P001_d	s_C_UTHJ8Y_P002_d	s_C_V013DA_P001_d	s_C_VR5HC4_P001_d	s_C_VR5HC4_P002_d	s_C_W6R1AF_M001_d	s_C_W6R1AF_P001_d	s_C_WFWD8H_M001_d	s_C_WFWD8H_M002_d	s_C_WFWD8H_P001_d	s_C_WT8RMD_M001_d	s_C_WT8RMD_M002_d	s_C_XNLFXL_M001_d	s_C_XNLFXL_P001_d	s_C_Y7NXWK_M001_d