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yaml marker matrix format #3

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mapourmaleki opened this issue Jun 25, 2020 · 1 comment
Open

yaml marker matrix format #3

mapourmaleki opened this issue Jun 25, 2020 · 1 comment

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@mapourmaleki
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yaml.scanner.ScannerError: while scanning for the next token
found character '\t' that cannot start any token
in "/work/shah/pourmalm/projects/astir/200624_ov_9patients_pre_post/marker_mat.yml", line 2, column 1

Below are the contents in marker_mat.yml

cell_types:
Tumor:
- panCK
T cell:
- CD3
CD8+ T cell:
- CD3
- CD8
Treg cell:
- CD3
- Foxp3
@kieranrcampbell
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Can you lint your yaml file at http://www.yamllint.com/ to make sure it's not corrupted? Thanks

kieranrcampbell added a commit that referenced this issue Apr 23, 2021
@kieranrcampbell
Add shrinkage prior on delta #3
4b7132d
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@kieranrcampbell @mapourmaleki