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list index out of range error in SCDataset.get_mu_init() #35

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ywu202300 opened this issue Sep 5, 2023 · 1 comment

ywu202300 commented Sep 5, 2023 •

edited

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To reproduce this error:

yaml file - >

cell_types:
  A:
  - marker1
  - marker2
  B:
  - marker1
  - marker3
  - maker 4

and all markers are inside of expression.csv

The "list index out of range error" coming from this line
, and "indices_to_use" is empty.

Any idea why it gives me an error? Thanks

The text was updated successfully, but these errors were encountered:

Member

kieranrcampbell commented Nov 16, 2023

hi @ywu202300 possible to share (a subsample of) the data you're running this with so we can debug? Thanks

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