Merge tag '1.14.0' into dev

* Making species and assembly required commandline arguments in the estep
* Change method by which read position index is resolved. Results in time saving.
* linasm is now required [linasm](http://linasm.sourceforge.net/index.php)
* New log and exp functions from [linasm](http://linasm.sourceforge.net/index.php)

CHANGES.md

@@ -1,6 +1,6 @@
 # CHANGES
 
-## NEXT
+## 1.14.0
 
 * Making species and assembly required commandline arguments in the estep
 * Change method by which read position index is resolved. Results in time saving.

INSTALL.TXT

@@ -3,7 +3,9 @@ System Requirements
 
 caveman is designed to run in a compute farm/clustre environment.
 caveman depends on:
-  htslib 1.3 <https://github.com/samtools/htslib/releases/download/1.3/htslib-1.3.tar.bz2>
+  htslib >=1.3 <https://github.com/samtools/htslib/releases/download/1.3/htslib-1.3.tar.bz2>
+  zlib >=1.2.3.5 <https://www.zlib.net/>
+  linasm >=1.13 <http://linasm.sourceforge.net/>
 
 
 Compilation

Makefile

@@ -1,4 +1,4 @@
-CAVEMAN_VERSION=1.13.16
+CAVEMAN_VERSION=1.14.0
 
 TEST_REF?=""
 #Compiler

README.md

@@ -24,7 +24,7 @@ See INSTALL.TXT
 * Reference.fasta and index
 * A one based bed style format file of regions to ignore during analysis (see specified format).
 * [zlib](https://zlib.net/) >= 1.2.3.5
-* [linasm](http://linasm.sourceforge.net/index.php)
+* [linasm](http://linasm.sourceforge.net/index.php) >= 1.13
 
 ## Optional inputs (will result in more accurate calls)