update to version 3.0.0.2

cancerit · Oct 11, 2023 · 5079736 · 5079736
1 parent 11591a9
commit 5079736
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Showing 3 changed files with 11 additions and 2 deletions.
diff --git a/CHANGELOG.md b/CHANGELOG.md
@@ -45,3 +45,12 @@ Initial release of QUANTS, created with the [nf-core](https://nf-co.re/) templat
 ## 3.0.0.1 - [12th September 2023]
 
 * Primer trimming - bugfix to ensure cutadapt splits reads into trimmed and untrimmed files
+
+## 3.0.0.2 - [11th October 2023]
+
+* Collation of cutadapt JSON results into single JSON file
+* Collation of SeqKit statistics results into a single TSV file
+* Update version of pyQUEST to version 1.1.0 
+    * Improved handling of 0-length reads 
+    * Ability to extract top 50 library-independent counts as FASTA 
+
diff --git a/modules/local/pyquest/main.nf b/modules/local/pyquest/main.nf
@@ -18,7 +18,7 @@ process PYQUEST {
         container "quay.io/biocontainers/flash2:2.2.00--h5bf99c6_3"
     }
     */
-    container "quay.io/wtsicgp/pyquest:1.0.0"
+    container "quay.io/wtsicgp/pyquest:1.1.0"
 
     input:
         tuple val(meta), path(reads)

diff --git a/nextflow.config b/nextflow.config
@@ -190,7 +190,7 @@ manifest {
     description     = 'Analysis pipeline for saturation genome editing screens'
     mainScript      = 'main.nf'
     nextflowVersion = '!>=21.10.6'
-    version         = '3.0.0.1'
+    version         = '3.0.0.2'
 }
 
 // Function to ensure that resource requirements don't go beyond