Merge tag 'v3.1.0' into dev

Add travis and fix up install method
cancerit · Oct 17, 2016 · 03f5811 · 03f5811
2 parents 396baac + 294c8b4
commit 03f5811
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Showing 6 changed files with 13 additions and 4 deletions.
diff --git a/CHANGES.md b/CHANGES.md
@@ -1,4 +1,8 @@
+### 3.1.0
+* Adds travis testing
+* Cleansup install script and adds multi versioned paths to options
+
 ### 3.0.0
 * Removed use of legacy Tabix codebase and switches to samtools 1.2+
 * Switches to gihub version of vcftools and makes several patches unnecessary
-* Several bugfixes
+* Several bugfixes
diff --git a/MANIFEST b/MANIFEST
@@ -1,3 +1,4 @@
+.travis.yml
 bin/Admin_EnsemblGtf2CacheConverter.pl
 bin/Admin_EnsemblReferenceFileGenerator.pl
 bin/Admin_EnsemblTranscriptFastaFilter.pl

diff --git a/README.md b/README.md
@@ -9,6 +9,10 @@ each variation/transcript combination and describes the effects in the mRNA, CDS
 contexts. It provides details of the sequence and position of the change within the transcript/protein
 as well as Sequence Ontology terms to classify its consequences.
 
+| Master | Dev |
+|---|---|
+|  [![Build Status](https://travis-ci.org/cancerit/VAGrENT.svg?branch=master)](https://travis-ci.org/cancerit/VAGrENT) | [![Build Status](https://travis-ci.org/cancerit/VAGrENT.svg?branch=dev)](https://travis-ci.org/cancerit/VAGrENT) |
+
 ---
 
 ###Dependencies/Install
@@ -70,4 +74,4 @@ them. For example, a copyright statement that reads ‘Copyright (c) 2005, 2007-
 reads ‘Copyright (c) 2005, 2007, 2008, 2009, 2011, 2012’ and a copyright
 statement that reads ‘Copyright (c) 2005-2012’ should be interpreted as being
 identical to a statement that reads ‘Copyright (c) 2005, 2006, 2007, 2008,
-2009, 2010, 2011, 2012’."
+2009, 2010, 2011, 2012’."
diff --git a/docs.tar.gz b/docs.tar.gz
diff --git a/lib/Sanger/CGP/Vagrent.pm b/lib/Sanger/CGP/Vagrent.pm
@@ -26,7 +26,7 @@ use strict;
 use Const::Fast qw(const);
 
 use base 'Exporter';
-our $VERSION = '3.0.2';
+our $VERSION = '3.1.0';
 our @EXPORT = qw($VERSION);
 
 1;
diff --git a/prerelease.sh b/prerelease.sh
@@ -46,7 +46,7 @@ echo '########## Running perl tests ##########'
 export HARNESS_PERL_SWITCHES=-MDevel::Cover=-db,reports,-select='^lib/*\.pm$',-ignore,'^t/'
 rm -rf docs
 mkdir -p docs/reports_text
-prove -w -I lib t
+prove -j 4 -w -I lib t
 
 echo '### Generating test/pod coverage reports ###'
 # removed 'condition' from coverage as '||' 'or' doesn't work properly