Merge branch 'release/1.16.0'

CHANGES.md

@@ -1,5 +1,11 @@
 # CHANGES
 
+## 1.16.0
+
+* Pulls in cgpCaVEManPostProcessing 1.9.0
+  * Edgecase fix for overlapping reads - cause +1 variant at WGS scale
+  * Major performance improvement (in post processing)
+
 ## 1.15.3
 
 * Build around CaVEMan core [1.14.1](https://github.com/cancerit/CaVEMan/releases/tag/1.14.0)
@@ -24,7 +30,7 @@
 
 ## 1.14.0
 
-* Created Docker file to build a containder for the wrapper. 
+* Created Docker file to build a containder for the wrapper.
 * Added quay.io badge for the image to the README.
 
 ## 1.13.14

Dockerfile

@@ -7,8 +7,7 @@ ENV VER_VCFTOOLS="0.1.16"
 ENV VER_CGPVCF="v2.2.1"
 ENV VER_CAVEMAN="1.14.1"
 ENV VER_BEDTOOLS="2.27.1"
-ENV VER_CGPCAVEPOSTPROC="1.8.9"
-ENV VER_CGPCAVEWRAP="1.15.3"
+ENV VER_CGPCAVEPOSTPROC="1.9.0"
 
 RUN apt-get -yq update
 RUN apt-get install -yq --no-install-recommends \
@@ -43,7 +42,7 @@ FROM ubuntu:16.04
 
 LABEL maintainer="[email protected]" \
       uk.ac.sanger.cgp="Cancer, Ageing and Somatic Mutation, Wellcome Trust Sanger Institute" \
-      version="1.15.3" \
+      version="1.16.0" \
       description="cgpCaVEManWrapper docker"
 
 RUN apt-get -yq update

lib/Sanger/CGP/Caveman.pm

@@ -26,6 +26,6 @@ package Sanger::CGP::Caveman;
 use strict;
 use Const::Fast qw(const);
 
-our $VERSION = '1.15.3';
+our $VERSION = '1.16.0';
 
 1;