Merge branch 'hotfix/3.1.4'

cancerit · Apr 16, 2019 · 133e33a · 133e33a
2 parents 8a0892e + 8671be5
commit 133e33a
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diff --git a/CHANGES.md b/CHANGES.md
@@ -1,5 +1,10 @@
 # CHANGES
 
+## 3.1.4
+
+* Update PCAP-core to 4.3.5
+  * Sppedup bamsort by adding sort helpers
+
 ## 3.1.3
 
 * Update PCAP-core to 4.3.4

diff --git a/Dockerfile b/Dockerfile
@@ -47,7 +47,7 @@ MAINTAINER  [email protected]
 
 LABEL vendor="Cancer, Ageing and Somatic Mutation, Wellcome Trust Sanger Institute"
 LABEL uk.ac.sanger.cgp.description="PCAP-core for dockstore.org"
-LABEL uk.ac.sanger.cgp.version="3.1.3"
+LABEL uk.ac.sanger.cgp.version="3.1.4"
 
 RUN apt-get -yq update
 RUN apt-get install -yq --no-install-recommends \

diff --git a/build/opt-build.sh b/build/opt-build.sh
@@ -14,7 +14,7 @@ VER_BIODBHTS="2.10"
 VER_BWA="v0.7.17"
 VER_HTSLIB="1.9"
 VER_SAMTOOLS="1.9"
-VER_PCAP="4.3.4"
+VER_PCAP="4.3.5"
 
 if [ "$#" -lt "1" ] ; then
   echo "Please provide an installation path such as /opt/ICGC"

diff --git a/cwls/mixins/requirements.yml b/cwls/mixins/requirements.yml
@@ -1,2 +1,2 @@
 class: DockerRequirement
-dockerPull: "quay.io/wtsicgp/dockstore-cgpmap:3.1.3"
+dockerPull: "quay.io/wtsicgp/dockstore-cgpmap:3.1.4"