fix!: Remove coordinate correction from fusion catcher translator (#212)

src/fusor/translator.py

@@ -303,15 +303,15 @@ async def from_fusion_catcher(
         tr_5prime = await self.fusor.transcript_segment_element(
             tx_to_genomic_coords=False,
             genomic_ac=self._get_genomic_ac(five_prime[0], rb),
-            seg_end_genomic=int(five_prime[1]) - 1,
+            seg_end_genomic=int(five_prime[1]),
             gene=gene_5prime_element.gene.label,
             get_nearest_transcript_junction=True,
         )
 
         tr_3prime = await self.fusor.transcript_segment_element(
             tx_to_genomic_coords=False,
             genomic_ac=self._get_genomic_ac(three_prime[0], rb),
-            seg_start_genomic=int(three_prime[1]) - 1,
+            seg_start_genomic=int(three_prime[1]),
             gene=gene_3prime_element.gene.label,
             get_nearest_transcript_junction=True,
         )

tests/test_translators.py

@@ -217,8 +217,8 @@ async def test_fusion_catcher(
     # Test exonic breakpoint
     five_prime_partner = "TPM3"
     three_prime_partner = "PDGFRB"
-    five_prime_fusion_point = "1:154170466:-"
-    three_prime_fusion_point = "5:150126613:-"
+    five_prime_fusion_point = "1:154170465:-"
+    three_prime_fusion_point = "5:150126612:-"
     predicted_effect = "exonic(no-known-CDS)/exonic(no-known-CDS)"
 
     fusion_catcher_fusor = await translator_instance.from_fusion_catcher(
@@ -234,8 +234,8 @@ async def test_fusion_catcher(
     # Test non-exonic breakpoint
     five_prime_partner = "TPM3"
     three_prime_partner = "PDGFRB"
-    five_prime_fusion_point = "1:154173079:-"
-    three_prime_fusion_point = "5:150127174:-"
+    five_prime_fusion_point = "1:154173078:-"
+    three_prime_fusion_point = "5:150127173:-"
     predicted_effect = "exonic(no-known-CDS)/exonic(no-known-CDS)"
 
     fusion_catcher_fusor_nonexonic = await translator_instance.from_fusion_catcher(