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start to clean up descriptions
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jsstevenson committed Mar 31, 2024
1 parent 5090759 commit b489e34
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6 changes: 4 additions & 2 deletions docs/source/index.rst
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@@ -1,5 +1,5 @@
Meta-Knowledgebase |version|
=========================
============================

.. image:: https://img.shields.io/pypi/v/metakb.svg
:alt: PyPI version
Expand All @@ -16,7 +16,9 @@ Meta-Knowledgebase |version|
:alt: tests status
:target: https://github.com/cancervariants/metakb/actions/workflows/checks.yaml

description
The Meta-Knowledgebase leverages the collective knowledge of the disparate existing resources of the cancer genomics community to improve the comprehensiveness of clinical interpretation of genomic variation. It utilizes biomedical concept normalization routines to transform ingested interpretation data into a standardized knowledge model that links evidence items according to

An ongoing goal will be to provide and improve upon standards and guidelines by which other groups with clinical interpretation data may make it accessible and visible to the public. We have released a preprint discussing our initial harmonization effort and observed disparities in the structure and content of variant interpretations.

.. toctree::
:hidden:
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8 changes: 4 additions & 4 deletions src/metakb/query.py
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Expand Up @@ -67,10 +67,10 @@ def __init__(
normalizers: Optional[ViccNormalizers] = None,
) -> None:
"""Initialize neo4j driver and the VICC normalizers.
:param str uri: address of Neo4j DB
:param Tuple[str, str] credentials: tuple containing username and
password
:param ViccNormalizers normalizers: normalizer collection instance
:param uri: address of Neo4j DB
:param credentials: tuple containing username and password
:param normalizers: normalizer collection instance
"""
if normalizers is None:
normalizers = ViccNormalizers()
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