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fix: aggregate moa oncotree concepts during transformation #413

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merged 3 commits into from
Dec 18, 2024

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close #409

  • Internal digest is now created using oncotree_code or oncotree_term
  • Since there may be duplicate codes or terms with different source text disease names, the first record will be used as the Disease label and others will be added to alternativeLabels
  • Also fixed return type annotation in _get_disease

close #409

* Internal digest is now created using `oncotree_code` or `oncotree_term`
* Since there may be duplicate codes or terms with different source text disease names, the first record will be used as the `Disease` label and others will be added to `alternativeLabels`
@korikuzma korikuzma added bug Something isn't working priority:medium Medium priority labels Dec 13, 2024
@korikuzma korikuzma requested a review from katiestahl December 13, 2024 18:42
@korikuzma korikuzma self-assigned this Dec 13, 2024
katiestahl
katiestahl previously approved these changes Dec 18, 2024
Base automatically changed from issue-408 to staging December 18, 2024 15:08
@korikuzma korikuzma dismissed katiestahl’s stale review December 18, 2024 15:08

The base branch was changed.

@korikuzma korikuzma merged commit 4ac6439 into staging Dec 18, 2024
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@korikuzma korikuzma deleted the issue-409 branch December 18, 2024 15:08
@jsstevenson jsstevenson mentioned this pull request Jan 4, 2025
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