Update GENIE3 to use assays slot of hummus_objects

cantinilab · Jun 21, 2024 · 25da3de · 25da3de
1 parent ae03cfe
commit 25da3de
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/R/layers.R b/R/layers.R
@@ -181,7 +181,7 @@ compute_gene_network <- function(
             verbose = verbose)
 
     # infer network
-    weightMat <- GENIE3::GENIE3(as.matrix(hummus[[gene_assay]]@counts),
+    weightMat <- GENIE3::GENIE3(as.matrix(hummus@assays[[gene_assay]]@counts),
                                regulators = tfs,
                                nCores = number_cores)
     # get edge list