update vignette to use Initiate_Hummus_Object

cantinilab · Apr 9, 2024 · d65a7f9 · d65a7f9
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commit d65a7f9
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diff --git a/R/hummus_objet.R b/R/hummus_objet.R
@@ -183,7 +183,7 @@ Hummus_Object <- setClass(
 #' @examples seurat_object <- Seurat::CreateSeuratObject(counts = matrix(rnorm(1000), nrow = 100, ncol = 10))
 #'          hummus <- InitiateHummus_Object(seurat_object)
 #'          hummus
-Initiate_Hummus_Object<- function(
+Initiate_Hummus_Object <- function(
   seurat_assays,
   active.assay = NULL,
   multilayer = NULL,

diff --git a/vignettes/add_networks.Rmd b/vignettes/add_networks.Rmd
@@ -40,7 +40,7 @@ Additionally, it contains a motifs_db object, providing tf motifs informations,
 # Load the Chen dataset, which is a Seurat object containing scRNA-seq and scATAC-seq data
 data("chen_dataset_subset")
 chen_dataset_subset
-hummus <- Initiate_HuMMuS_Object(chen_dataset_subset)
+hummus <- Initiate_Hummus_Object(chen_dataset_subset)
 
 
 # wrapper of Signac::GetGRangesFromEnsDb, adapting output to UCSC format

diff --git a/vignettes/chen_vignette.Rmd b/vignettes/chen_vignette.Rmd
@@ -73,7 +73,7 @@ data("chen_dataset_subset")
 chen_dataset_subset
 
 # Create an hummus object from seurat object
-hummus <- Initiate_HuMMuS_Object(chen_dataset_subset)
+hummus <- Initiate_Hummus_Object(chen_dataset_subset)
 ```
 
 ### 1.2. Add genome and motif annotations to hummus object