Update maf.R #161
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Your workflow is using a version of actions/cache that is scheduled for deprecation, actions/cache@v2. Please update your workflow to use the latest version of actions/cache to avoid interruptions. Learn more: https://github.blog/changelog/2024-09-16-notice-of-upcoming-deprecations-and-changes-in-github-actions-services/
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The following actions uses node12 which is deprecated and will be forced to run on node16: r-lib/actions/setup-pandoc@v1, actions/cache@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
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The following actions use a deprecated Node.js version and will be forced to run on node20: actions/checkout@v3, r-lib/actions/setup-pandoc@v1, actions/cache@v2. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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/private/var/folders/g6/rgtlsw6n123b0gt5483s5_cm0000gn/T/RtmpshzZSQ/Rbuild43b34ff732a6/CNAqc/man/plot_SBS.Rd:14: unexpected section header '\value'
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/private/var/folders/g6/rgtlsw6n123b0gt5483s5_cm0000gn/T/RtmpshzZSQ/Rbuild43b34ff732a6/CNAqc/man/plot_SBS.Rd:17: unexpected section header '\description'
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/private/var/folders/g6/rgtlsw6n123b0gt5483s5_cm0000gn/T/RtmpshzZSQ/Rbuild43b34ff732a6/CNAqc/man/plot_SBS.Rd:24: unexpected section header '\examples'
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/private/var/folders/g6/rgtlsw6n123b0gt5483s5_cm0000gn/T/RtmpshzZSQ/Rbuild43b34ff732a6/CNAqc/man/plot_SBS.Rd:33: unexpected END_OF_INPUT '
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Install dependencies
replacing previous import ‘cli::num_ansi_colors’ by ‘crayon::num_ansi_colors’ when loading ‘easypar’
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Install dependencies
replacing previous import ‘cli::num_ansi_colors’ by ‘crayon::num_ansi_colors’ when loading ‘easypar’
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Install dependencies
replacing previous import ‘cli::num_ansi_colors’ by ‘crayon::num_ansi_colors’ when loading ‘easypar’
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Install dependencies
replacing previous import ‘cli::num_ansi_colors’ by ‘crayon::num_ansi_colors’ when loading ‘BMix’
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Install dependencies
replacing previous import ‘crayon::%+%’ by ‘ggplot2::%+%’ when loading ‘BMix’
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Install dependencies
replacing previous import ‘cli::num_ansi_colors’ by ‘crayon::num_ansi_colors’ when loading ‘BMix’
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Install dependencies
replacing previous import ‘crayon::%+%’ by ‘ggplot2::%+%’ when loading ‘BMix’
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Install dependencies
replacing previous import ‘cli::num_ansi_colors’ by ‘crayon::num_ansi_colors’ when loading ‘BMix’
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Install dependencies
replacing previous import ‘crayon::%+%’ by ‘ggplot2::%+%’ when loading ‘BMix’
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Install dependencies
unable to access index for repository https://bioconductor.org/packages/3.18/bioc/bin/macosx/big-sur-arm64/contrib/4.4:
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Run r-lib/actions/setup-pandoc@v1
r-lib/actions/setup-pandoc@v1 is deprecated. Please update your workflow to use the 'v2' version.
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The ubuntu-18.04 environment is deprecated, consider switching to ubuntu-20.04(ubuntu-latest), or ubuntu-22.04 instead. For more details see https://github.com/actions/virtual-environments/issues/6002
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