fix bug map_mutations_to_subclonal_segments #159
AliceAntonelloAnnotations
4 errors and 44 warnings
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windows-latest (release)
Build process failed
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windows-latest (release)
Process completed with exit code 1.
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macOS-latest (release)
No such keg: /opt/homebrew/Cellar/r
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ubuntu-18.04 (release)
This request was automatically failed because there were no enabled runners online to process the request for more than 1 days.
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windows-latest (release)
The following actions uses node12 which is deprecated and will be forced to run on node16: r-lib/actions/setup-pandoc@v1. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
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windows-latest (release)
The following actions uses Node.js version which is deprecated and will be forced to run on node20: actions/checkout@v3, r-lib/actions/setup-pandoc@v1. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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windows-latest (release)
replacing previous import 'cli::num_ansi_colors' by 'crayon::num_ansi_colors' when loading 'easypar'
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windows-latest (release)
replacing previous import 'cli::num_ansi_colors' by 'crayon::num_ansi_colors' when loading 'easypar'
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windows-latest (release)
replacing previous import 'cli::num_ansi_colors' by 'crayon::num_ansi_colors' when loading 'easypar'
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windows-latest (release)
replacing previous import 'cli::num_ansi_colors' by 'crayon::num_ansi_colors' when loading 'BMix'
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windows-latest (release)
replacing previous import 'crayon::%+%' by 'ggplot2::%+%' when loading 'BMix'
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windows-latest (release)
replacing previous import 'cli::num_ansi_colors' by 'crayon::num_ansi_colors' when loading 'BMix'
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windows-latest (release)
replacing previous import 'crayon::%+%' by 'ggplot2::%+%' when loading 'BMix'
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windows-latest (release)
replacing previous import 'cli::num_ansi_colors' by 'crayon::num_ansi_colors' when loading 'BMix'
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windows-latest (release)
replacing previous import 'crayon::%+%' by 'ggplot2::%+%' when loading 'BMix'
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windows-latest (release)
unable to access index for repository https://bioconductor.org/packages/3.18/bioc/bin/windows/contrib/4.4:
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windows-latest (release)
No files were found with the provided path: check. No artifacts will be uploaded.
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windows-latest (release)
C:/Users/runneradmin/AppData/Local/Temp/RtmpIrW4ga/Rbuild11e03aab6f75/CNAqc/man/plot_SBS.Rd:14: unexpected section header '\value'
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windows-latest (release)
C:/Users/runneradmin/AppData/Local/Temp/RtmpIrW4ga/Rbuild11e03aab6f75/CNAqc/man/plot_SBS.Rd:17: unexpected section header '\description'
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windows-latest (release)
C:/Users/runneradmin/AppData/Local/Temp/RtmpIrW4ga/Rbuild11e03aab6f75/CNAqc/man/plot_SBS.Rd:24: unexpected section header '\examples'
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windows-latest (release)
C:/Users/runneradmin/AppData/Local/Temp/RtmpIrW4ga/Rbuild11e03aab6f75/CNAqc/man/plot_SBS.Rd:33: unexpected END_OF_INPUT '
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r-lib/actions/setup-pandoc@v1 is deprecated.
r-lib/actions/setup-pandoc@v1 is deprecated. Please update your workflow to use the 'v2' version.
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macOS-latest (release)
The following actions uses node12 which is deprecated and will be forced to run on node16: r-lib/actions/setup-pandoc@v1, actions/cache@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
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macOS-latest (release)
The following actions uses Node.js version which is deprecated and will be forced to run on node20: actions/checkout@v3, r-lib/actions/setup-pandoc@v1, actions/cache@v2. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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macOS-latest (release)
pkg-config 0.29.2_3 is already installed and up-to-date.
To reinstall 0.29.2_3, run:
brew reinstall pkg-config
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macOS-latest (release)
HOMEBREW_NO_INSTALLED_DEPENDENTS_CHECK is set: not checking for outdated
dependents or dependents with broken linkage!
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macOS-latest (release)
/private/var/folders/xz/lz5thm6s3vb1vdkk77vmkgbr0000gn/T/RtmplPG60C/Rbuild367343ab04ab/CNAqc/man/plot_SBS.Rd:14: unexpected section header '\value'
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macOS-latest (release)
/private/var/folders/xz/lz5thm6s3vb1vdkk77vmkgbr0000gn/T/RtmplPG60C/Rbuild367343ab04ab/CNAqc/man/plot_SBS.Rd:17: unexpected section header '\description'
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macOS-latest (release)
/private/var/folders/xz/lz5thm6s3vb1vdkk77vmkgbr0000gn/T/RtmplPG60C/Rbuild367343ab04ab/CNAqc/man/plot_SBS.Rd:24: unexpected section header '\examples'
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macOS-latest (release)
/private/var/folders/xz/lz5thm6s3vb1vdkk77vmkgbr0000gn/T/RtmplPG60C/Rbuild367343ab04ab/CNAqc/man/plot_SBS.Rd:33: unexpected END_OF_INPUT '
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macOS-latest (release)
Found the following significant warnings:
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macOS-latest (release)
Found the following file with non-ASCII characters:
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macOS-latest (release)
'::' or ':::' imports not declared from:
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macOS-latest (release)
checkRd: (-1) augment_with_maf.Rd:35: Lost braces in \itemize; meant \describe ?
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macOS-latest (release)
Codoc mismatches from Rd file 'annotate_variants.Rd':
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macOS-latest (release)
Undocumented arguments in Rd file 'as_maftools_obj.Rd'
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macOS-latest (release)
replacing previous import ‘cli::num_ansi_colors’ by ‘crayon::num_ansi_colors’ when loading ‘easypar’
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macOS-latest (release)
replacing previous import ‘cli::num_ansi_colors’ by ‘crayon::num_ansi_colors’ when loading ‘easypar’
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macOS-latest (release)
replacing previous import ‘cli::num_ansi_colors’ by ‘crayon::num_ansi_colors’ when loading ‘easypar’
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macOS-latest (release)
replacing previous import ‘cli::num_ansi_colors’ by ‘crayon::num_ansi_colors’ when loading ‘BMix’
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macOS-latest (release)
replacing previous import ‘crayon::%+%’ by ‘ggplot2::%+%’ when loading ‘BMix’
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macOS-latest (release)
replacing previous import ‘cli::num_ansi_colors’ by ‘crayon::num_ansi_colors’ when loading ‘BMix’
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macOS-latest (release)
replacing previous import ‘crayon::%+%’ by ‘ggplot2::%+%’ when loading ‘BMix’
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macOS-latest (release)
replacing previous import ‘cli::num_ansi_colors’ by ‘crayon::num_ansi_colors’ when loading ‘BMix’
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macOS-latest (release)
replacing previous import ‘crayon::%+%’ by ‘ggplot2::%+%’ when loading ‘BMix’
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macOS-latest (release)
unable to access index for repository https://bioconductor.org/packages/3.18/bioc/bin/macosx/big-sur-arm64/contrib/4.4:
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r-lib/actions/setup-pandoc@v1 is deprecated.
r-lib/actions/setup-pandoc@v1 is deprecated. Please update your workflow to use the 'v2' version.
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R-CMD-check
The ubuntu-18.04 environment is deprecated, consider switching to ubuntu-20.04(ubuntu-latest), or ubuntu-22.04 instead. For more details see https://github.com/actions/virtual-environments/issues/6002
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