Bruker2csv
Python script I've been using to convert Bruker's NMR files into csv files. Currently, the script takes Bruker's binary file and converts it into a csv file containing three columns with the ppm scale, intensity and normalized intensity.
This script requires the following Python packages:
- NMRglue : https://github.com/jjhelmus/nmrglue
- Numpy : https://github.com/numpy/numpy
- Pandas : https://github.com/pandas-dev/pandas
If you have a working Python and pip installation you can install all the dependancies by running
pip install nmrglue numpy pandas
As provided, you should open the script bruker2csv.py and add the directory to the file you want to extract
data_dir = os.path.normpath('C:/Bruker/TopSpin4.1.3/data/400/Sample/10/pdata/1')
You should also choose the filename of the exported file. Usually I add the nucleus and the sample id.
sample_name = '1H_zeolite'
Then you should run on your command line
python bruker2csv.py
and a new csv file will be created
In my workflow, I use this script in Jupyter Notebook and plot the NMR spectrum using Matplotlib. See the bruker2csv_JN.ipynb file.
Feel free to contact me if you need any help using this!