Merge pull request #126 from carpentries-incubator/lgmain

Cite data carpentry ecology lesson
carpentries-incubator · Mar 19, 2024 · 4dc09df · 4dc09df
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diff --git a/episodes/10-data-organisation.Rmd b/episodes/10-data-organisation.Rmd
@@ -24,6 +24,9 @@ exercises: 30
 
 ::::::::::::::::::::::::::::::::::::::::::::::::::
 
+> This episode is based on the Data Carpentries's *Data Analysis and
+> Visualisation in R for Ecologists* lesson.
+
 ## Spreadsheet programs
 
 **Question**
@@ -105,7 +108,7 @@ ensure efficient downstream analysis.
 - Which ones do you think spreadsheets are good for?
 - Have you accidentally done something in a spreadsheet program that made you
   frustrated or sad?
-  
+
 
 ::::::::::::::::::::::::::::::::::::::::::::::::::
 
@@ -327,7 +330,7 @@ wrong with this data and how you would fix it.
 - How many universal donors (O-) have been tested?
 - What is the average weight of AB men?
 - How many samples have been tested in the different hospitals?
-  
+
 
 ::::::::::::::::::::::::::::::::::::::::::::::::::
 
@@ -563,15 +566,15 @@ confusion and enables others to readily interpret your fields.
 
 **Examples**
 
-| Good Name        | Good Alternative  | Avoid             | 
+| Good Name        | Good Alternative  | Avoid             |
 | ---------------- | ----------------- | ----------------- |
-| Max\_temp\_C       | MaxTemp           | Maximum Temp (°C) | 
-| Precipitation\_mm | Precipitation     | precmm            | 
-| Mean\_year\_growth | MeanYearGrowth    | Mean growth/year  | 
-| sex              | sex               | M/F               | 
-| weight           | weight            | w.                | 
-| cell\_type        | CellType          | Cell Type         | 
-| Observation\_01   | first\_observation | 1st Obs           | 
+| Max\_temp\_C       | MaxTemp           | Maximum Temp (°C) |
+| Precipitation\_mm | Precipitation     | precmm            |
+| Mean\_year\_growth | MeanYearGrowth    | Mean growth/year  |
+| sex              | sex               | M/F               |
+| weight           | weight            | w.                |
+| cell\_type        | CellType          | Cell Type         |
+| Observation\_01   | first\_observation | 1st Obs           |
 
 ### Using special characters in data {#special}
 
@@ -830,5 +833,3 @@ without having to look at it and/or fix it.
 - Good data organization is the foundation of any research project.
 
 ::::::::::::::::::::::::::::::::::::::::::::::::::
-
-
diff --git a/episodes/20-r-rstudio.Rmd b/episodes/20-r-rstudio.Rmd
@@ -23,6 +23,9 @@ exercises: 0
 
 ::::::::::::::::::::::::::::::::::::::::::::::::::
 
+> This episode is based on the Data Carpentries's *Data Analysis and
+> Visualisation in R for Ecologists* lesson.
+
 ## What is R? What is RStudio?
 
 The term [R](https://www.r-project.org/) is used to refer to the

diff --git a/episodes/23-starting-with-r.Rmd b/episodes/23-starting-with-r.Rmd
@@ -28,6 +28,9 @@ exercises: 60
 
 ::::::::::::::::::::::::::::::::::::::::::::::::::
 
+> This episode is based on the Data Carpentries's *Data Analysis and
+> Visualisation in R for Ecologists* lesson.
+
 ## Creating objects in R
 
 You can get output from R simply by typing math in the console:

diff --git a/episodes/25-starting-with-data.Rmd b/episodes/25-starting-with-data.Rmd
@@ -27,6 +27,9 @@ exercises: 30
 
 ::::::::::::::::::::::::::::::::::::::::::::::::::
 
+> This episode is based on the Data Carpentries's *Data Analysis and
+> Visualisation in R for Ecologists* lesson.
+
 ## Presentation of the gene expression data
 
 We are going to use part of the data published by [Blackmore *et al.*

diff --git a/episodes/30-dplyr.Rmd b/episodes/30-dplyr.Rmd
@@ -31,6 +31,9 @@ download.file(url = "https://github.com/carpentries-incubator/bioc-intro/raw/mai
               destfile = "data/rnaseq.csv")
 ```
 
+> This episode is based on the Data Carpentries's *Data Analysis and
+> Visualisation in R for Ecologists* lesson.
+
 ## Data manipulation using **`dplyr`** and **`tidyr`**
 
 Bracket subsetting is handy, but it can be cumbersome and difficult to

diff --git a/episodes/40-visualization.Rmd b/episodes/40-visualization.Rmd
@@ -31,6 +31,9 @@ download.file(url = "https://github.com/carpentries-incubator/bioc-intro/raw/mai
 rna <- read.csv("data/rnaseq.csv")
 ```
 
+> This episode is based on the Data Carpentries's *Data Analysis and
+> Visualisation in R for Ecologists* lesson.
+
 ## Data Visualization
 
 We start by loading the required packages. **`ggplot2`** is included in