Updates
- build-in blast_regexp now captures even non-standard accessions present in refseq and updated to capture new pdb chains with up to 4 character chains id's
- add support and recommend blast 2.9 due to update of blastdb format (dbv5 - lower then 2.8.1 not compatible with now used ncbi databases)
Html output updates
- colour scheme change
- message for uncertain extended hits
- added original HSP position indication to the sequence viewer (with "--show_HSP" flag)
New "--entrez" option for downloading needed sequences directly from rboAnalyzer pipeline
- suitable for one-time analysis
- works only if the ids captured by the "blast_regexp" are accession.version id's present in the NCBI nucleotide database
- valid email address is required with this option
- if provided the "-db" option is not used