API docs #163
Workflow file for this run
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: Dev Testing | |
| on: | |
| pull_request: | |
| workflow_dispatch: | |
| concurrency: | |
| group: ${{ github.workflow }}-${{ github.event.pull_request.number || github.ref }} | |
| cancel-in-progress: true | |
| jobs: | |
| run: | |
| name: Ubuntu tests with Python ${{ matrix.python-version }} | |
| runs-on: ubuntu-latest | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| python-version: ["3.9", "3.10", "3.11", "3.12"] | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - run: git fetch --prune --unshallow --tags | |
| - name: Setup Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Global Setup | |
| run: | | |
| pip install -U pip | |
| pip install pytest-xdist | |
| git config --global user.email "[email protected]" | |
| git config --global user.name "CI Almighty" | |
| pip install wheel==0.41.2 # needed for scanimage | |
| - name: Install full requirements | |
| run: | | |
| pip install .[test] | |
| pip install .[full] | |
| - name: Clone and Install NeuroConv | |
| run: | | |
| git clone https://github.com/catalystneuro/neuroconv.git | |
| cd neuroconv | |
| pip install --no-cache-dir .[full,test] | |
| cd ../ | |
| - name: Get ophys_testing_data current head hash | |
| id: ophys | |
| run: echo "::set-output name=HASH_OPHYS_DATASET::$(git ls-remote https://gin.g-node.org/CatalystNeuro/ophys_testing_data.git HEAD | cut -f1)" | |
| - name: Cache ophys dataset - ${{ steps.ophys.outputs.HASH_OPHYS_DATASET }} | |
| uses: actions/cache@v2 | |
| id: cache-ophys-datasets | |
| with: | |
| path: ./ophys_testing_data | |
| key: ophys-datasets-042023-ubuntu-latest-${{ steps.ophys.outputs.HASH_OPHYS_DATASET }} | |
| - name: Run NeuroConv tests | |
| run: | | |
| pytest -n auto --dist loadscope neuroconv/tests/test_ophys neuroconv/tests/test_on_data/test_imaging_interfaces.py neuroconv/tests/test_on_data/test_segmentation_interfaces.py |