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Update support list
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pauladkisson authored Jan 31, 2024
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Expand Up @@ -21,20 +21,23 @@ See [documentation](https://roiextractors.readthedocs.io/en/latest/) for details
### Supported file types:
#### Imaging
1. HDF5
2. TIFF
3. STK
4. FLI
5. SBX
2. Miniscope
3. NWB
4. SBX
5. Micromanager
6. Bruker
7. ScanImage

#### Segmentation
1. [calciumImagingAnalysis](https://github.com/bahanonu/calciumImagingAnalysis) (CNMF-E, EXTRACT)
2. [SIMA](http://www.losonczylab.org/sima/1.3.2/)
3. [NWB](https://pynwb.readthedocs.io/en/stable/)
4. [suite2p](https://github.com/MouseLand/suite2p)
45. Numpy (a data format for manual input of optical physiology data as various numpy datasets)
5. Numpy (a data format for manual input of optical physiology data as various numpy datasets)
6. [CaImAn](https://github.com/flatironinstitute/CaImAn)

#### Functionality:
This package provides a common API for various optical imaging and segmentation formats streamline conversion and data analysis.
This package provides a common API for various optical imaging and segmentation formats to streamline conversion and data analysis.

## Example Datasets:
Example datasets are maintained at https://gin.g-node.org/CatalystNeuro/ophys_testing_data.
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