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Update SegmentationExtractor#366

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pauladkisson wants to merge 32 commits into0.6.0catalystneuro/roiextractors:0.6.0from segmentationcatalystneuro/roiextractors:segmentationCopy head branch name to clipboard

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Commits

Commits on Sep 24, 2024

• renamed neuropil --> background

  pauladkisson

  committed
  986f264

Commits on Sep 25, 2024

• removed channels and num_planes

  pauladkisson

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  0362270

• renamed imagingextractor_mixin to imaging_extractor_mixin

  pauladkisson

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  575fac8

• removed channels

  pauladkisson

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  0483635

• renamed imagingextractor_mixin to imaging_extractor_mixin

  pauladkisson

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  0aa7d8d

• fixed bug with all None roi_responses

  pauladkisson

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  9ed3179

• corrected _image_masks typo

  pauladkisson

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  372fb8e

Commits on Sep 26, 2024

• added initial tests and refactored segmentation extractor to use abstractmethods like imagingextractor does

  pauladkisson

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  0c11101

• removed write_segmentation

  pauladkisson

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  4bf2630

• updated get_background_pixel_masks

  pauladkisson

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  21a8240

• removed properties from numpysegmentationextractor

  pauladkisson

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  116ddfb

• reordered segmentation methods

  pauladkisson

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  b7a4411

• split background response from roi responses

  pauladkisson

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  28af405

• added some tests

  pauladkisson

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  e135ffe

• added background_image_masks to numpyseg

  pauladkisson

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  e6e2e4b

• finished simple tests (w/o parameterization)

  pauladkisson

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  232db7f

Commits on Sep 27, 2024

• fixed bug with num_background

  pauladkisson

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  9daf8b7

• refactored numpysegmentationextractor

  pauladkisson

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  367cc7b

• extracted different init modes into separate fns

  pauladkisson

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  7199605

• updated docstring

  pauladkisson

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  468e91a

• extracted get_default_roi_locations_from_image_masks to extraction_tools

  pauladkisson

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  809fda1

• extracted get_roi_indices to base segmentation clas

  pauladkisson

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  8d8733c

• reordered methods to match base

  pauladkisson

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  5c4005d

• added tests for get_roi_indices

  pauladkisson

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  76f325c

• added parameterization for test

  pauladkisson

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  24de1fe

• added parameterization for test

  pauladkisson

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  b3d9352

• flattened parameterization

  pauladkisson

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  bf8b546

• fixed typo

  pauladkisson

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  b031781

• added tests fromFile

  pauladkisson

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  cbd1691

• added TODO

  pauladkisson

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  64aac0e

Commits on Sep 28, 2024

• added frame_slice

  pauladkisson

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  fedb4bd

Commits on Sep 30, 2024

• get_args for compound types

  pauladkisson

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  2dd85af