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@cbg-ethz

Computational Biology Group (CBG)

Beerenwinkel Lab at ETH Zurich

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  1. V-pipe V-pipe Public

    V-pipe is a pipeline designed for analysing NGS data of short viral genomes

    Jupyter Notebook 135 47

Repositories

Showing 10 of 108 repositories
  • oncotree2vec Public

    A method for embedding and clustering of tumor mutation trees.

    cbg-ethz/oncotree2vec’s past year of commit activity
    Python 8 0 0 0 Updated Apr 4, 2025
  • sr2silo Public

    Wrangling short-read sequencing data for import into SILO

    cbg-ethz/sr2silo’s past year of commit activity
    Python 1 MIT 0 17 5 Updated Apr 4, 2025
  • oncotreeVIS Public

    An interactive graphical user interface for visualizing mutation tree cohorts.

    cbg-ethz/oncotreeVIS’s past year of commit activity
    JavaScript 0 MIT 0 0 0 Updated Apr 2, 2025
  • Jnotype Public

    Probabilistic modeling of high-dimensional binary data in JAX

    cbg-ethz/Jnotype’s past year of commit activity
    Python 3 0 6 2 Updated Apr 1, 2025
  • LongSom Public

    LongSom tool for long-reads

    cbg-ethz/LongSom’s past year of commit activity
    Python 8 0 3 0 Updated Apr 1, 2025
  • RSV-wastewater-V-pipe Public

    Wastewater-derived Respiratory Syncytial Virus data analysis

    cbg-ethz/RSV-wastewater-V-pipe’s past year of commit activity
    Python 0 Apache-2.0 0 0 0 Updated Apr 1, 2025
  • pangolin Public

    BSSE COVID-19 sequencing of test swab samples

    cbg-ethz/pangolin’s past year of commit activity
    Shell 7 3 1 0 Updated Apr 1, 2025
  • WisePulse Public

    WISE Loculus with V-Pipe – Infra for start-to-end viral wastewater analysis.

    cbg-ethz/WisePulse’s past year of commit activity
    0 MIT 0 3 0 Updated Apr 1, 2025
  • mnem Public

    Mixture Nested Effects Models - https://doi.org/10.1093/bioinformatics/bty602 - https://bioconductor.org/packages/mnem

    cbg-ethz/mnem’s past year of commit activity
    R 4 3 0 0 Updated Apr 1, 2025
  • covvfit Public

    Fitness estimates of SARS-CoV-2 variants

    cbg-ethz/covvfit’s past year of commit activity
    Python 1 MIT 0 6 2 Updated Mar 29, 2025
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