Merge branch 'release/1.41.1' #71
Workflow file for this run
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| on: [push, pull_request] | |
| name: R-CMD-check | |
| jobs: | |
| R-CMD-check: | |
| if: "! contains(github.event.head_commit.message, '[ci skip]')" | |
| timeout-minutes: 30 | |
| runs-on: ${{ matrix.config.os }} | |
| name: ${{ matrix.config.os }} (${{ matrix.config.r }}) ${{ matrix.config.label }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| config: | |
| # - {os: windows-latest, r: 'devel' } | |
| # - {os: windows-latest, r: 'release' } | |
| # - {os: windows-latest, r: 'oldrel' } | |
| # - {os: macOS-14, r: 'devel' } | |
| # - {os: macOS-latest, r: 'release' } | |
| # - {os: macOS-latest, r: 'oldrel' } | |
| - {os: ubuntu-latest, r: 'devel' } | |
| - {os: ubuntu-latest, r: 'release' } | |
| # - {os: ubuntu-latest, r: 'oldrel' } | |
| # - {os: ubuntu-latest, r: 'oldrel-1' } | |
| # - {os: ubuntu-latest, r: 'oldrel-2' } | |
| # - {os: ubuntu-latest, r: '3.5' } | |
| # - {os: ubuntu-latest, r: 'release' , language: ko, label: ko } | |
| # - {os: ubuntu-latest, r: 'release' , language: zh_CN, label: zh_CN } | |
| # - {os: ubuntu-latest, r: 'release' , language: zh_TW, label: zh_TW } | |
| env: | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| R_KEEP_PKG_SOURCE: yes | |
| R_REMOTES_NO_ERRORS_FROM_WARNINGS: true | |
| ## Test in other locale (optional) | |
| LANGUAGE: ${{ matrix.config.language }} | |
| ## R CMD check | |
| _R_CHECK_CRAN_INCOMING_: false | |
| _R_CHECK_LENGTH_1_CONDITION_: true | |
| _R_CHECK_LENGTH_1_LOGIC2_: true | |
| _R_CHECK_MATRIX_DATA_: true | |
| _R_CHECK_SUGGESTS_ONLY_: true | |
| _R_CHECK_S3_METHODS_SHOW_POSSIBLE_ISSUES_: true | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: r-lib/actions/setup-pandoc@v2 | |
| - uses: r-lib/actions/setup-tinytex@v2 | |
| - name: Install additional LaTeX packages | |
| run: | | |
| tlmgr --version | |
| ## Additional LaTeX packages needed by BiocStyle: | |
| tlmgr install ae bera bibleref caption changepage enumitem everysel fancyhdr footmisc grfext hobsub marginfix mathtools nowidow parnotes parskip placeins preprint ragged2e setspace soul titlesec xstring | |
| tlmgr list --only-installed | |
| - uses: r-lib/actions/setup-r@v2 | |
| with: | |
| r-version: ${{ matrix.config.r }} | |
| http-user-agent: ${{ matrix.config.http-user-agent }} | |
| use-public-rspm: true | |
| - uses: r-lib/actions/setup-r-dependencies@v2 | |
| with: | |
| extra-packages: any::rcmdcheck | |
| needs: check | |
| - name: Session info | |
| run: | | |
| options(width = 100) | |
| capabilities() | |
| parallelly::availableCores(which = "all") | |
| pkgs <- installed.packages()[, "Package"] | |
| sessioninfo::session_info(pkgs, include_base = TRUE) | |
| ## Verify LANGUAGE settings by generating a translatable error | |
| cat(sprintf("LANGUAGE=%s\n", sQuote(Sys.getenv("LANGUAGE")))) | |
| cat(sprintf("locales: %s\n", sQuote(Sys.getlocale()))) | |
| tryCatch(log("a"), error = conditionMessage) | |
| shell: Rscript {0} | |
| - name: Check | |
| run: | | |
| skip_vignettes <- (getRversion() < "4.0.0") | |
| rcmdcheck::rcmdcheck( | |
| build_args = if (skip_vignettes) "--no-build-vignettes" else "--compact-vignettes=both", | |
| args = c("--no-manual", "--as-cran", if (skip_vignettes) "--ignore-vignettes"), | |
| error_on = "error", | |
| check_dir = "check" | |
| ) | |
| shell: Rscript {0} | |
| - name: Upload check results | |
| if: failure() | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: ${{ runner.os }}-r${{ matrix.config.r }}-results | |
| path: check |