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Centre for Computational Medicine at SickKids

The Centre for Computational Medicine (CCM) is a Core Facility within the SickKids Research Institute. Email: ccm dot contact at sickkids dot ca
README.md

The Centre for Computational Medicine (CCM)

The Centre for Computational Medicine (CCM) is a Core Facility within The Hospital for Sick Children (SickKids) Research Institute. Our mission is to provide the scientists and clinicians at SickKids with computational expertise, including high performance computing resources, bioinformatics analysis consulting, and software development. The CCM also acts as a collaboration nexus, working with both biological/medical and computational scientists at SickKids and the University of Toronto to identify appropriate collaborators.

Read more about our projects and our team at ccm.sickkids.ca!

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  1. crg2 crg2 Public

    Research pipeline for exploring clinically relevant genomic variants

    Python 17 5

  2. MetaFusion MetaFusion Public

    Python 8 2

  3. stager stager Public

    Share genomic and exomic datasets and request analyses. Deployed for Care4Rare.

    TypeScript 7

  4. osmp osmp Public

    One-Sided Matching Portal

    TypeScript 6 1

  5. slurm-rest-py slurm-rest-py Public

    OpenAPI client package for the Slurm REST API, automatically generated by OpenAPI-generator.

    Python 1 1

  6. status status Public

    📈 Uptime monitor and status page for Centre for Computational Medicine at SickKids, powered by @upptime

    Markdown

Repositories

Showing 10 of 34 repositories
  • status Public

    📈 Uptime monitor and status page for Centre for Computational Medicine at SickKids, powered by @upptime

    ccmbioinfo/status’s past year of commit activity
    Markdown 0 MIT 0 1 0 Updated Mar 22, 2025
  • status-genomics4rd Public

    📈 Uptime monitor and status page for Centre for Computational Medicine at SickKids, powered by @upptime

    ccmbioinfo/status-genomics4rd’s past year of commit activity
    Markdown 0 MIT 0 0 0 Updated Mar 22, 2025
  • FORCAST Public

    Finding, Optimizing, and Reporting Cas Targets: a fully-integrated and open-source pipeline to design CRISPR mutagenesis experiments.

    ccmbioinfo/FORCAST’s past year of commit activity
    Python 4 1 0 0 Updated Mar 21, 2025
  • crg2-pacbio Public
    ccmbioinfo/crg2-pacbio’s past year of commit activity
    Python 0 0 8 3 Updated Mar 21, 2025
  • crg2 Public

    Research pipeline for exploring clinically relevant genomic variants

    ccmbioinfo/crg2’s past year of commit activity
    Python 17 Apache-2.0 5 38 8 Updated Mar 20, 2025
  • seqr Public Forked from broadinstitute/seqr

    web-based analysis tool for rare disease genomics. Forked from Broad Institute, hosted for CCM

    ccmbioinfo/seqr’s past year of commit activity
    Perl 0 AGPL-3.0 90 0 1 Updated Mar 17, 2025
  • gtex-openapi Public

    OpenAPI Generated Python package for interfacing with the Broad Institute GTEx API

    ccmbioinfo/gtex-openapi’s past year of commit activity
    0 0 0 0 Updated Mar 11, 2025
  • osmp Public

    One-Sided Matching Portal

    ccmbioinfo/osmp’s past year of commit activity
    TypeScript 6 1 3 15 Updated Mar 8, 2025
  • seqr-cfi Public Forked from broadinstitute/seqr

    web-based analysis tool for rare disease genomics. Forked from Broad Institute, hosted for CFI on G4RD

    ccmbioinfo/seqr-cfi’s past year of commit activity
    Python 0 AGPL-3.0 90 2 9 Updated Feb 27, 2025
  • cre Public

    excel report generation using data from bcbio variant2 germline pipeline

    ccmbioinfo/cre’s past year of commit activity
    Shell 4 MIT 0 0 6 Updated Feb 6, 2025
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