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CHANGELOG.md

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seqr Changes

dev

9/6/22

  • Disable mixed authorization for local and AnVIL permissions (REQUIRES DB MIGRATION)

8/23/22

  • Add consent code for projects (REQUIRES DB MIGRATION)

7/19/22

  • Add "Incomplete Penetrance" functional tag type (REQUIRES DB MIGRATION)

7/12/22

  • Add MITO dataset type (REQUIRES DB MIGRATION)

6/23/22

  • Migrate RGP case note formatting (REQUIRES DB MIGRATION)

5/2/22

  • Add db indices for RNAseq outlier models (REQUIRES DB MIGRATION)

4/25/22

  • Trigger airflow DAG on AnVIL loading request

4/19/22

  • Add data type to family analysed by (REQUIRES DB MIGRATION)
  • Add ClinGen reference data (REQUIRES DB MIGRATION)

4/11/22

  • Remove pre-built static assets (REQUIRES IMAGE UPDATE)

3/25/22

  • Update display for translocations

3/18/22

  • Disallow deleting individuals in matchmaker (REQUIRES DB MIGRATION)
  • Add GenCC reference data (REQUIRES DB MIGRATION)
  • Update local pipeline to use latest clinvar

3/10/22

  • Return hom alt SNPs in trans with Deletions as compound hets
  • Disable variant download in demo projects (REQUIRES DB MIGRATION)

3/2/22

  • Update seqr dockerfile to improve immutability and build automation (REQUIRES IMAGE UPDATE)
  • Adds NPM asset build to the seqr dockerfile
  • Bumps major version of react/ redux

2/4/22

  • Show RNA-seq expression data (REQUIRES DB MIGRATION)
  • Allow deletion of analysed families (REQUIRES DB MIGRATION)
  • Allow bulk updating assigned analysts

1/27/22

  • Separate structural annotation search for gCNV and genome SVs

1/26/22

  • Improved usage for docker-compose pipeline runner
  • Add support for serving the django media root out of a google cloud storage bucket

1/21/22

  • Support setting explicit order for saved search display (REQUIRES DB MIGRATION)

1/7/22

  • Update variant layout
  • Project page performance optimization

12/24/21

  • Show RNA-seq outlier data (REQUIRES DB MIGRATION)

12/07/21

  • Show delay warning on AnVIL loading requests

11/23/21

  • Update the seqr Dockerfile base image from debian:stretch to python:3.7-slim-bullseye
  • Consolidation and cleanup of various RUN tasks in the seqr Dockerfile

11/17/21

  • Update pathogenicity search to override frequency filters
  • Add ACMG classifier to variants (REQUIRES DB MIGRATION)

11/10/21

  • Update in-silico score filtering behavior and add splice AI override

10/25/21

  • Add search filtering by in-silico score

10/21/21

  • Support updated WES SV loading pipeline format

9/30/21

  • Allow project-specific HGMD access (REQUIRES DB MIGRATION)
  • Demo project available to all users (REQUIRES DB MIGRATION)
  • Update pedigree label display (requires manual cleanup for saved pedigree datasets)
  • Support application downtime/ warning messages (REQUIRES DB MIGRATION)

9/17/21

  • Change family note fields into lists of notes (REQUIRES DB MIGRATION)
  • Add Panel App gene list integration (REQUIRES DB MIGRATION)

9/10/21

  • Use google storage API instead of gsutil for IGV

9/3/21

  • Add last updated information for family analysis_status (REQUIRES DB MIGRATION)

8/25/21

  • Better validation for MME match results
  • Send notification when adding dataset

8/20/21

  • Support loading/ searching data using ES aliases
  • Added changelog