docker-compose.test.yaml

version: "3.9"

services:
  mysql:
    image: mysql:8.0
    environment:
      TZ: America/Toronto
      MYSQL_DATABASE: "${TEST_MYSQL_DATABASE}"
      MYSQL_USER: "${TEST_MYSQL_USER}"
      MYSQL_PASSWORD: "${TEST_MYSQL_PASSWORD}"
      MYSQL_ROOT_PASSWORD: "${TEST_MYSQL_ROOT_PASSWORD}"
  minio:
    image: minio/minio:RELEASE.2022-06-20T23-13-45Z
    environment:
      TZ: America/Toronto
      MINIO_ROOT_USER: "${TEST_MINIO_ACCESS_KEY}"
      MINIO_ROOT_PASSWORD: "${TEST_MINIO_SECRET_KEY}"
      MINIO_REGION_NAME:
      MINIO_UPDATE: "off"
    command: server /data --console-address ":9090"
    # console address not needed but kept for consistency
  app:
    build: flask
    image: ghcr.io/ccmbioinfo/stager:dev
    environment:
      ST_SECRET_KEY:
      TEST_ST_DATABASE_URI: "mysql+pymysql://${TEST_MYSQL_USER}:${TEST_MYSQL_PASSWORD}@mysql/${TEST_MYSQL_DATABASE}"
      TEST_MINIO_ENDPOINT: minio:9000
      TEST_MINIO_ACCESS_KEY: "${TEST_MINIO_ACCESS_KEY}"
      TEST_MINIO_SECRET_KEY: "${TEST_MINIO_SECRET_KEY}"
      MINIO_REGION_NAME:
    depends_on:
      - mysql
      - minio
    volumes:
      - ./flask:/usr/src/stager
    command: pytest