Polymicrobial-Signature-of-Sepsis

Name		Name	Last commit message	Last commit date
Latest commit History 40 Commits
archive		archive
datasets		datasets
results		results
.gitignore		.gitignore
README.md		README.md
SparCC_networks_external_validation.R		SparCC_networks_external_validation.R
SparCC_networks_karius.R		SparCC_networks_karius.R
XGboost_hold_grumaz_out.ipynb		XGboost_hold_grumaz_out.ipynb
XGboost_hold_kapusta_out.ipynb		XGboost_hold_kapusta_out.ipynb
XGboost_hold_karius_out.ipynb		XGboost_hold_karius_out.ipynb
XGboost_hold_out.ipynb		XGboost_hold_out.ipynb
XGboost_karius_080720.ipynb		XGboost_karius_080720.ipynb
XGboost_karius_SHAP.ipynb		XGboost_karius_SHAP.ipynb
XGboost_karius_drop_confirmed_full_models.ipynb		XGboost_karius_drop_confirmed_full_models.ipynb
XGboost_pooled.ipynb		XGboost_pooled.ipynb
XGboost_pooled_SHAP.ipynb		XGboost_pooled_SHAP.ipynb
XGboost_pooled_maxi_silva.ipynb		XGboost_pooled_maxi_silva.ipynb
barplot_kapusta_NTC.R		barplot_kapusta_NTC.R
calculate_proportion_unclassified_reads.R		calculate_proportion_unclassified_reads.R
confirmed_pathogens_plot.R		confirmed_pathogens_plot.R
grumaz_metadata_parser.R		grumaz_metadata_parser.R
kraken2_report_parser.py		kraken2_report_parser.py
pca_tsne_septic.R		pca_tsne_septic.R
shap_per_infection.R		shap_per_infection.R
silva_versus_maxi_barplot.R		silva_versus_maxi_barplot.R
single_feature_barplots.R		single_feature_barplots.R

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