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1. bin3C bin3C Public

   Extract metagenome-assembled genomes (MAGs) from metagenomic data using Hi-C.

   Python 23 8

2. sim3C sim3C Public

   Read-pair simulation of 3C-based sequencing methodologies (HiC, Meta3C, DNase-HiC)

   Python 20 6

3. qc3C qc3C Public

   Reference-free quality assessment for Hi-C sequencing data

   HTML 13 1

4. scaffold3C scaffold3C Public

   Find the chromosomal order and orientation of contigs using Hi-C sequencing data information

   Python

5. meta-sweeper meta-sweeper Public

   Parametric sweep of simulated microbial communities and metagenomic sequencing.

   Python 11

6. shap shap Public

   Simple High-throughput Annotation Pipeline

   Java