Code

Implement mass-metallicity relations#58

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cgarling merged 82 commits intomaincgarling/StarFormationHistories.jl:mainfrom MZRcgarling/StarFormationHistories.jl:MZRCopy head branch name to clipboardJan 25, 2025

+3,797-798

Commits

Commits on Nov 17, 2024

• Add new MZR doc page

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Commits on Nov 21, 2024

• Continue working on MZR derivation

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Commits on Nov 22, 2024

• More MZR derivations

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• More explanation in linear AMR fg!

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Commits on Nov 24, 2024

• Continue MZR derivation

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Commits on Nov 28, 2024

• continuing derivation

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Commits on Dec 1, 2024

• Add tups_to_mat to convert tuples to matrix

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• Add general derivation for MZR model parameters

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Commits on Dec 2, 2024

• Add StatsBase to test environment

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• Begin adding MZR functionality from notebook

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• Add docs for the new MZR functions

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• Remove T_max from calculate_coeffs arguments

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• Start adding tests for fg_mzr!

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Commits on Dec 3, 2024

• Support arbitrary logAge in fg_mzr!

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Commits on Dec 4, 2024

• Change npar to nparams and add method

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• Add methods for transformations

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• Fitting function fit_sfh with Optim.jl working

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• Fix treatment of fixed parameters

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Commits on Dec 5, 2024

• Add invH, mzr, and disp fields to return

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• Add BFGSResult type for return from fitting

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Commits on Dec 6, 2024

• Fix exptransform doctest

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• Remove old MZR_old.md doc file

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• Reorganize mzr_test.jl and test BFGSResult

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Commits on Dec 7, 2024

• Fix sampling of fixed variables in BFGSResult

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Commits on Dec 10, 2024

• Add CompositeBFGSResult type

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• Add HMC sampling code

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• Remove old HMC code with warmup

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• Remove old return statements from fit_sfh

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• many things sorry

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Commits on Dec 12, 2024

• Use @turbo in exptransform_samples!

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Commits on Dec 15, 2024

• Revert @turbo use in exptransform_samples!

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• Add cum_sfr_quantiles

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Commits on Dec 16, 2024

• Only fit free variables -- fix sampling methods

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Commits on Jan 4, 2025

• Change MZROptimizer to HierarchicalOptimizer

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• Move fg_mzr! to fg! to support generic AMR

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• Move code to generic locations

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• Allow fit_sfh to use AbstractMetallicityModel

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• Consolidate MZR code

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• Add docstring for fg! internal function

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• Correct treatment of F and G in fg!

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• Document variables argument

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• Document kws... passthrough in fit_sfh

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• Functioning LinearAMR generic implementation

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• Add LogarithmicAMR along with tests

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• Add dZ_dMH

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• Stabilizing LogarithmicAMR sfh solves

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• Remove old AMR tests

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• Christmas 2024 push

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• tsample_sfh updates

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• Remove old thread partitioning code tsample_sfh

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• Fix tsample_sfh for fixed parameters

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• Refactor mzr to MHmodel in mzr_test.jl

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• Add ProgressMeter for tsample_sfh

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• simplify threaded sampling

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• remove old implementation

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• fix tests

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Commits on Jan 8, 2025

• Remove stale imports

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• Clean up formatting, docs

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• Update example notebook for new APIs

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• Fix readme badge

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Commits on Jan 13, 2025

• Allow for zero slope in AMR and MZR models

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• Add nparams method for multiple models

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• Rename variables to fit new API

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• Bump minor version for breaking changes

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• Remove hermitianpart to support older Julias

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• Clean up tups_to_mat type signature

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• Fix tups_to_mat docstring

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• Try to fix unbound arguments in tups_to_mat

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• Fix unbound arguments in tups_to_mat

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• Fix methods signatures in tups_to_mat

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• Remove old tups_to_mat code

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Commits on Jan 14, 2025

• Add Compat.jl and PDMats.jl to dependencies

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• Fix random sampling from BFGSResult on old Julia

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• Reorganize old BFGSResult sampling code

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• Switch to arch: aarch64 for mac os CI

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• Update README.md

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Commits on Jan 17, 2025

• Dont specialize on number of tuples tups_to_mat

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• Add more generic tups_to_mat for iterables

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Commits on Jan 21, 2025

• Update docstrings of tups_to_mat properly

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Commits on Jan 25, 2025

• Fix free parameter indexing bug in fit_sfh

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• Add test to verify fix

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• Add Pkg.build and PYTHON envar to docs CI

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