Code

Ac kubernetes#182

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Acribbs merged 22 commits intomastercgat-developers/cgat-core:masterfrom AC-kubernetescgat-developers/cgat-core:AC-kubernetesCopy head branch name to clipboardJan 9, 2025

+872-102

Commits

Commits on Nov 3, 2024

• included initial kubernetes module

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  6daf925

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• included new get executor function and replaced make_runner to include kubernetes exectuor

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  6ec06c1

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• made changes to kubernetes imports

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Commits on Nov 10, 2024

• have included a new BaseExecutior and included inherited executor classes in seperate file

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  8f33f53

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• Merge branch 'master' into AC-kubernetes

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• added option to run LocalExecutor if in testing

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  5245d77

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• added python kubernetes import to conda

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• have made localExecutor the fallback Executor

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• to_cluster False defaults to localExecutor

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Commits on Nov 11, 2024

• re-written tests for the new Executors and have tested all of them with new Mocks

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  69aa7ba

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• Merge branch 'master' into AC-kubernetes

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Commits on Dec 3, 2024

• merge master

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Commits on Jan 1, 2025

• Merge branch 'master' into AC-kubernetes

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  216e628

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• Missing slurm monitor_job_completion function not originally implemented

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  e99c399

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• Added tests to check slurm job monitoring

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  1260fd1

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• Added tests for other job monitoring for sge and torque as they were also missing

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  d5db251

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• Added missing collect_benchmark_data to executors

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  24fd1e8

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• added collect_benchmark_data to baseexecutor

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  87936f0

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• updated kubernetes executor with new benchmakring data

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  594b551

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• Added docuementation for kubernetes

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  0c52a7b

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• Have added Coverage tests

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  1764d16

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• removed coverage tests

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