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rdcore: Juggle physical root versus deployment root
This is prep for supporting composefs, where the physical root is distinct from the deployment root. Specifically for the LUKS case, we can find `/etc/crypttab` only in the deployment root. Otherwise, we suffix the passed path (usually `/sysroot`) that was mounted in the initramfs with `/sysroot` to find the physical root. xref ostreedev/ostree#2867
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