docs: update readme

README.md

@@ -1,30 +1,39 @@
-# chaimeleon-etl-chup_prostate
+# chaimeleon-etl-chup-prostate
 
 ## Deploy notes
 
-1. Download/copy xlsx and csv files on data folder (./data).
-2. Deploy datake database running below command:
+1. Clone the repository
+```sh
+git clone https://github.com/chaimeleon-eu/chaimeleon-etl-chup-prostate.git
+``` 
+2. Initialize the submodule
+```sh
+git submodule init
+git submodule update
+```
+3. Download/copy xlsx and csv files on data folder (./data).
+4. Deploy datake database running below command:
 ```sh
 make deploy_datalake
 ```
-3. Now, you can run ETL in two ways:
+5. Now, you can run ETL in two ways:
 
-   3.1 Running the two dataflows at once:
+   5.1 Running the two dataflows at once:
     ```sh
     make etl_chup_prostate
     ```
 
-   3.2 Or running dataflows in several process:
+   5.2 Or running dataflows in several process:
     ```sh
     make etl_chup_prostate_datalake
     make etl_chup_prostate_indexa
     ```
-4. Check everything is okay querying data on indexa database and/or seeing outputs from above commands.
-5. Stop and remove datalake container.
+6. Check everything is okay querying data on indexa database and/or seeing outputs from above commands.
+7. Stop and remove datalake container.
 ```sh
 make down
 ```
-6. Retrieve xml files from outputs folder.
+8. Retrieve xml files from outputs folder.
 
 ## Software dependencies
 * Docker (tested version: **20.10.17, build 100c701**).