Fix Benchmarking 'NoneType' object is not subscriptable error (#289)

chanzuckerberg · Aug 26, 2023 · 50827d1 · 50827d1
1 parent 56c3092
commit 50827d1
Showing 1 changed file with 3 additions and 0 deletions.
diff --git a/workflows/benchmark/benchmark_helpers/benchmark_helpers/harvest.py b/workflows/benchmark/benchmark_helpers/benchmark_helpers/harvest.py
@@ -59,6 +59,9 @@ def load_contig_lengths(contig_fasta):
         lines = cleanup.enter_context(open(contig_fasta))
         cur = None
         for line in lines:
+            if "ASSEMBLY FAILED" in line:
+                return {}
+
             if line.startswith(">"):
                 if cur is not None:
                     lengths[cur[0]] = cur[1]