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mlin committed Aug 13, 2023
1 parent d6008ab commit 2716c92
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2 changes: 1 addition & 1 deletion README.md
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## Install miniwdl

Installation requires Python 3.6+, pip3 (or conda) and Docker (or Podman/Singularity/udocker). Linux preferred; [macOS compatible with extra steps](https://github.com/chanzuckerberg/miniwdl/issues/145). More detail in [full documentation](https://miniwdl.readthedocs.io/en/latest/getting_started.html).
Installation requires Python 3.6+, pip3 (or conda) and Docker (or Podman/Singularity/udocker). Linux preferred; [macOS (Intel) compatible with extra steps](https://github.com/chanzuckerberg/miniwdl/issues/145). More detail in [full documentation](https://miniwdl.readthedocs.io/en/latest/getting_started.html).

- Install with pip [![PyPI version](https://img.shields.io/pypi/v/miniwdl.svg)](https://pypi.org/project/miniwdl/) : run `pip3 install miniwdl`
- Install with conda [![Anaconda-Server Badge](https://anaconda.org/conda-forge/miniwdl/badges/version.svg)](https://anaconda.org/conda-forge/miniwdl) : run `conda install -c conda-forge miniwdl`
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10 changes: 6 additions & 4 deletions WDL/runtime/config_templates/default.cfg
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[download_aria2c]
# see: https://github.com/chanzuckerberg/miniwdl/tree/main/tools_image
docker = ghcr.io/miniwdl-ext/miniwdl-tools:Id_sha256_bc1b60cb6fb7274bb8d215c9646d53b4f4d4fcb099e56ca2dda9ce2013a7a1bc
docker = ghcr.io/miniwdl-ext/miniwdl-tools:Id_sha256_6cf3c7e37141ee50cbd692b872f4cbb92ecaab9eccc899263f6bcbea8f45a8b4


[download_awscli]
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# Failing all of the above, public S3 URIs can always be used.
host_credentials = false
# see: https://github.com/chanzuckerberg/miniwdl/tree/main/tools_image
docker = ghcr.io/miniwdl-ext/miniwdl-tools:Id_sha256_bc1b60cb6fb7274bb8d215c9646d53b4f4d4fcb099e56ca2dda9ce2013a7a1bc
docker = ghcr.io/miniwdl-ext/miniwdl-tools:Id_sha256_6cf3c7e37141ee50cbd692b872f4cbb92ecaab9eccc899263f6bcbea8f45a8b4


[download_gsutil]
# current version from https://github.com/GoogleCloudPlatform/cloud-sdk-docker/releases
docker = gcr.io/google.com/cloudsdktool/cloud-sdk:427.0.0-slim
# current version:
# docker pull gcr.io/google.com/cloudsdktool/cloud-sdk:slim
# docker run gcr.io/google.com/cloudsdktool/cloud-sdk:slim gcloud version
docker = gcr.io/google.com/cloudsdktool/cloud-sdk:442.0.0-slim


[call_cache]
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2 changes: 1 addition & 1 deletion requirements.dev.txt
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# requirements.txt which are needed for miniwdl to run in common use.
-r requirements.txt
pyre-check==0.0.27
black==23.1.0
black==23.7.0
pylint
sphinx
sphinx-autobuild
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