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ontology updates w/ 5.3.0 #1023

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jahilton opened this issue Sep 26, 2024 · 3 comments
Open

ontology updates w/ 5.3.0 #1023

jahilton opened this issue Sep 26, 2024 · 3 comments
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5.3 Next minor CELLxGENE schema version after 5.2 curation Updates to published datasets

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@jahilton
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jahilton commented Sep 26, 2024

Carried over from #958

@jahilton jahilton added curation Updates to published datasets 5.3 Next minor CELLxGENE schema version after 5.2 labels Sep 26, 2024
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jahilton commented Oct 3, 2024

The following donors in the following Collections will need to have development_stage updated to 90yr+ once the term is available - obophenotype/developmental-stage-ontologies#77

@jychien
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jychien commented Oct 19, 2024

Private collection: "Single Nuclei Atlas of Innervated and Denervated Mouse Muscle" have the following NTRs at CL:

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jychien commented Nov 15, 2024

Private collection: "Cyclin replacement hijacks the cell cycle's genetic regulatory program to orchestrate multiciliogenesis" will need to following:

  • CL:0000065 (“ependymal cell”) in both cell_type_ontology_term_id and tissue_ontology_term_id will need to be updated to CL:4052001 ("multiciliated ependymal cell")

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