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Issues list

Multiome: Generate chromosome length from fasta files. curation software discovery
#1285 opened Mar 5, 2025 by Bento007
Multiome: using incorrect chromosome table returns an ambiguous pandas exception rather than a validation error message bug Something isn't working
#1283 opened Mar 4, 2025 by brianraymor
Multiome: negative values in the fifth_column must fail validation bug Something isn't working curation software tech Tech issues that do not require product prioritization. Tech debt, tooling, ops, etc.
#1282 opened Mar 4, 2025 by brianraymor
Multiome: incorrect types in fragment columns return ambiguous pandas exception rather than a validation error message bug Something isn't working curation software tech Tech issues that do not require product prioritization. Tech debt, tooling, ops, etc.
#1281 opened Mar 4, 2025 by brianraymor
Mulitome: unsupported organism_ontology_term_id returns an ambiguous KeyError rather than a validation error message bug Something isn't working curation software tech Tech issues that do not require product prioritization. Tech debt, tooling, ops, etc.
#1280 opened Mar 4, 2025 by brianraymor
Multiome: include paired/unpaired assay check in process-fragment instead of as a separate cli command curation software tech Tech issues that do not require product prioritization. Tech debt, tooling, ops, etc.
#1279 opened Mar 4, 2025 by brianraymor
Multiome: anndata validation should occur before fragment file validation curation software tech Tech issues that do not require product prioritization. Tech debt, tooling, ops, etc.
#1278 opened Mar 4, 2025 by brianraymor
Multiome: validation error messages are "lost in all the output" curation software tech Tech issues that do not require product prioritization. Tech debt, tooling, ops, etc.
#1277 opened Mar 4, 2025 by brianraymor
Restore genetic ancestry 6.0 Next major CELLxGENE schema version blocked schema CELLxGENE Discover dataset schema
#1265 opened Feb 25, 2025 by brianraymor
R API notebooks rendering issues bug Something isn't working docs Improvements or additions to documentation tech Tech issues that do not require product prioritization. Tech debt, tooling, ops, etc.
#1264 opened Feb 24, 2025 by ivirshup
Breaking Change: update the requirements for feature_name annotation 6.0 Next major CELLxGENE schema version drafting drafting schema requirements schema CELLxGENE Discover dataset schema
#1254 opened Feb 11, 2025 by brianraymor
@brianraymor
Draft requirements for term labels that appear in both taxon specific ontologies and taxon neutral ontologies 6.0 Next major CELLxGENE schema version discovery schema CELLxGENE Discover dataset schema species Adding new species to CELLxGENE
#1186 opened Jan 22, 2025 by brianraymor
@brianraymor
re-curate non-human/-mouse data post-schema 5.3 6.0 Next major CELLxGENE schema version curation Updates to published datasets
#1182 opened Jan 22, 2025 by jahilton
@jahilton
re-curate ATAC data for schema 5.3 5.3 Next minor CELLxGENE schema version after 5.2 curation Updates to published datasets
#1181 opened Jan 21, 2025 by jahilton
@jahilton
1
Add breed for small set of "livestock" species 6.0 Next major CELLxGENE schema version discovery schema CELLxGENE Discover dataset schema species Adding new species to CELLxGENE
#1180 opened Jan 21, 2025 by brianraymor
@brianraymor
BUG: scipy 1.15.0 breaking validation bug Something isn't working tech Tech issues that do not require product prioritization. Tech debt, tooling, ops, etc.
#1165 opened Jan 7, 2025 by Bento007
Draft Gallus gallus (chicken) drafting drafting schema requirements schema CELLxGENE Discover dataset schema species Adding new species to CELLxGENE
#1159 opened Dec 19, 2024 by brianraymor
@brianraymor
Draft Bos taurus (Cow) drafting drafting schema requirements schema CELLxGENE Discover dataset schema species Adding new species to CELLxGENE
#1156 opened Dec 18, 2024 by brianraymor
@brianraymor
[BUG] Bone marrow cell annotation in Tabula Muris Senis 10x bug Something isn't working curation Updates to published datasets
#1151 opened Dec 10, 2024 by bfurtwa
4
add clarity to document and tests to enforce categorical datatypes with string/object values. curation software tech Tech issues that do not require product prioritization. Tech debt, tooling, ops, etc.
#1146 opened Dec 3, 2024 by ejmolinelli
move stateful checks (e.g. is_visium, is_single) higher up in the validator to avoid potential state-related issues curation software tech Tech issues that do not require product prioritization. Tech debt, tooling, ops, etc.
#1125 opened Nov 21, 2024 by ejmolinelli
5 tasks
bug: anndata 0.11.0 breaking CLI bug Something isn't working curation software tech Tech issues that do not require product prioritization. Tech debt, tooling, ops, etc.
#1096 opened Nov 14, 2024 by Bento007
Human Brain Cell Atlas - revise cell_type annotation curation Updates to published datasets
#1093 opened Nov 13, 2024 by jahilton
@jahilton
1
cellxgene-schema CLI is not correctly enforcing obs['is_primary_data'] 6.0 Next major CELLxGENE schema version bug Something isn't working curation software dp Data Platform Team work
#1076 opened Oct 30, 2024 by brianraymor
2
Breaking change: one organism per dataset with matching feature reference 6.0 Next major CELLxGENE schema version drafting drafting schema requirements schema CELLxGENE Discover dataset schema species Adding new species to CELLxGENE
#1074 opened Oct 28, 2024 by brianraymor
@brianraymor
5
ProTip! no:milestone will show everything without a milestone.