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currently the chromosome table for both mouse and human are hardcoded into the atac_seq.py. This will eventually become problematic when it's time to update the gencode version. This process should be automated when ever gencode version are updated.
currently the chromosome table for both mouse and human are hardcoded into the atac_seq.py. This will eventually become problematic when it's time to update the gencode version. This process should be automated when ever gencode version are updated.
single-cell-curation/cellxgene_schema_cli/cellxgene_schema/atac_seq.py
Lines 24 to 25 in ded6f4c
DoD
The chromosome lengths are generate from a fasta file from gencode and usable by the atac validation code.
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