CI #831
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| name: CI | |
| on: | |
| push: | |
| branches: | |
| - "main" | |
| pull_request: | |
| branches: | |
| - "main" | |
| schedule: | |
| - cron: "0 0 * * *" | |
| workflow_dispatch: | |
| concurrency: | |
| group: "${{ github.workflow }}-${{ github.ref }}" | |
| cancel-in-progress: true | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| jobs: | |
| test: | |
| name: Test on ${{ matrix.os }}, Python ${{ matrix.python-version }}, Env ${{ matrix.deps }} | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: [macOS-latest, ubuntu-latest] | |
| python-version: ["3.10", "3.11"] | |
| deps: ["devtools/conda-envs/test_env.yaml"] | |
| steps: | |
| - name: Checkout Repository | |
| uses: actions/checkout@v3 | |
| - name: Additional info about the build | |
| run: | | |
| uname -a | |
| df -h | |
| ulimit -a | |
| # More info on options: https://github.com/conda-incubator/setup-miniconda | |
| - name: Setup Micromamba | |
| uses: mamba-org/setup-micromamba@v1 | |
| with: | |
| environment-file: ${{ matrix.deps }} | |
| environment-name: test | |
| create-args: >- | |
| python==${{ matrix.python-version }} | |
| - name: Install package | |
| run: | | |
| python -m pip install . --no-deps | |
| micromamba list | |
| - name: Run tests | |
| run: | | |
| pytest -v --cov=mtenn --cov-report=xml --color=yes mtenn/tests/ | |
| - name: Upload Code Coverage to Codecov | |
| uses: codecov/codecov-action@v3 | |
| # Don't upload coverage scheduled or on fork | |
| if: ${{ github.repository == 'choderalab/mtenn' | |
| && github.event != 'schedule' }} | |
| with: | |
| file: ./coverage.xml | |
| flags: unittests | |
| name: codecov-${{ matrix.os }}-py${{ matrix.python-version }}-env${{ matrix.deps }} | |
| fail_ci_if_error: false |