Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Update README #24

Merged
merged 3 commits into from
Sep 26, 2024
Merged
Show file tree
Hide file tree
Changes from all commits
Commits
File filter

Filter by extension

Filter by extension

Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
5 changes: 0 additions & 5 deletions LICENSE.md
Original file line number Diff line number Diff line change
@@ -1,9 +1,4 @@
---
title: "Licenses"
---

## Instructional Material

All Carpentries (Software Carpentry, Data Carpentry, and Library Carpentry)
instructional material is made available under the [Creative Commons
Attribution license][cc-by-human]. The following is a human-readable summary of
Expand Down
86 changes: 23 additions & 63 deletions README.md
Original file line number Diff line number Diff line change
@@ -1,72 +1,32 @@
# The Carpentries Workbench Template Markdown Lesson
[![pages-build-deployment](https://github.com/christopher-wild/FAIR4RS-Packaging/actions/workflows/pages/pages-build-deployment/badge.svg)](https://github.com/christopher-wild/FAIR4RS-Packaging/actions/workflows/pages/pages-build-deployment)

This lesson is a template lesson that uses [The Carpentries Workbench][workbench].

## Note about lesson life cycle stage
Although the `config.yaml` states the life cycle stage as pre-alpha, **the template is stable and ready to use**. The life cycle stage is preset to `"pre-alpha"` as this setting is appropriate for new lessons initialised using the template.
# Research Software Documentation

## Create a new repository from this template
This repository contains a course on documenting research software that is part of the [training provision for research computing](https://sites.google.com/sheffield.ac.uk/research-training/) at the University of Sheffield.

To use this template to start a new lesson repository,
make sure you're logged into Github.
Visit https://github.com/carpentries/workbench-template-md/generate
and follow the instructions.
Checking the 'Include all branches' option will save some time waiting for the first website build
when your new repository is initialised.
## Course description

If you have any questions, contact [@tobyhodges](https://github.com/tobyhodges)
Research software is increasingly becoming a key and fundamental part of research. There is a growing recognition that research software would benefit from adhering to the FAIR principles, which is the main motivation behind the FAIR4RS (Findable, Accessible, Interoperable, Reusable for Research Software) principles. This is an extension of the FAIR principles, which acknowledges the applicability of the FAIR approach to research software. Software packaging has many benefits, such as enabling your research software to be discovered, installed, and utilised with ease. This course will explore the fundamental concepts of FAIR4RS, how it applies to packaging, its execution within Python, and the adoption of best practices in this domain.

## Configure a new lesson

Follow the steps below to
complete the initial configuration of a new lesson repository built from this template:
## Course overview

1. **Make sure GitHub Pages is activated:**
navigate to _Settings_,
select _Pages_ from the left sidebar,
and make sure that `gh-pages` is selected as the branch to build from.
If no `gh-pages` branch is available, check _Actions_ to see if the first
website build workflows are still running.
The branch should become available when those have completed.
1. **Adjust the `config.yaml` file:**
this file contains global parameters for your lesson site.
Individual fields within the file are documented with comments (beginning with `#`)
At minimum, you should adjust all the fields marked 'FIXME':
- `title`
- `created`
- `keywords`
- `life_cycle` (the default, _pre-alpha_, is the appropriate for brand new lessons)
- `contact`
1. **Annotate the repository** with site URL and topic tags:
navigate back to the repository landing page and
click on the gear wheel/cog icon (similar to ⚙️)
at the top-right of the _About_ box.
Check the "Use your GitHub Pages website" option,
and [add some keywords and other annotations to describe your lesson](https://cdh.carpentries.org/the-carpentries-incubator.html#topic-tags)
in the _Topics_ field.
At minimum, these should include:
- `lesson`
- the life cycle of the lesson (e.g. `pre-alpha`)
- the human language the lesson is written in (e.g. `deutsch`)
1. **Adjust the
`CODE_OF_CONDUCT.md`, `CONTRIBUTING.md`, and `LICENSE.md` files**
as appropriate for your project.
- `CODE_OF_CONDUCT.md`:
if you are using this template for a project outside The Carpentries,
you should adjust this file to describe
who should be contacted with Code of Conduct reports,
and how those reports will be handled.
- `CONTRIBUTING.md`:
depending on the current state and maturity of your project,
the contents of the template Contributing Guide may not be appropriate.
You should adjust the file to help guide contributors on how best
to get involved and make an impact on your lesson.
- `LICENSE.md`:
in line with the terms of the CC-BY license,
you should ensure that the copyright information
provided in the license file is accurate for your project.
1. **Update this README with
[relevant information about your lesson](https://carpentries.github.io/lesson-development-training/collaborating-newcomers.html#readme)**
and delete this section.
This course introduces the importance of packaging in the context of research software reproducibility. In particular, the course outline is:

[workbench]: https://carpentries.github.io/sandpaper-docs/
1. Overview FAIR4RS and Software Packaging
2. History of Python Packaging
3. Accessing Packages
4. Versioning
5. Publishing Python Packages


## Prerequisites

- Basic understanding of Python
- Version control/GitHub


# Contact us

Please contact [Research & Innovation IT](https://sheffield.ac.uk/it-services/research) or [Research Software Engineering](https://rse.shef.ac.uk/) at the University of Sheffield.
5 changes: 5 additions & 0 deletions SECURITY.md
Original file line number Diff line number Diff line change
@@ -0,0 +1,5 @@
# Security Policy

## Reporting a Vulnerability

To report a security problem, please [create a new issue](../../issues/new) using the issue tracker on this repository.

Check warning on line 5 in SECURITY.md

View workflow job for this annotation

GitHub Actions / Build markdown source files if valid

[missing file]: [create a new issue](../../issues/new)
Loading