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Issues list

Remove hardcoded nextflow.config paths bug Something isn't working
#95 opened Mar 12, 2025 by azmigueldario updated Mar 12, 2025
1
@azmigueldario @mayee123
Create a subworkflow for Variant visualization enhancement New feature or request
#85 opened Nov 20, 2024 by jimmyliu1326 updated Feb 25, 2025
2 tasks done
Create a Subworkflow for Variant calling enhancement New feature or request
#84 opened Nov 20, 2024 by jimmyliu1326 updated Feb 25, 2025
8 of 9 tasks
@azmigueldario @mayee123
1
Create a Nextflow module for Nucmer enhancement New feature or request
#78 opened Nov 20, 2024 by jimmyliu1326 updated Dec 13, 2024
2 tasks done
@azmigueldario
2
Create a Nextflow module for Snippy_core enhancement New feature or request
#79 opened Nov 20, 2024 by jimmyliu1326 updated Dec 11, 2024
2 tasks done
@mayee123
Create a Nextflow module for Snippy enhancement New feature or request
#75 opened Nov 20, 2024 by jimmyliu1326 updated Dec 11, 2024
2 tasks done
@mayee123
Create a Nextflow module for Gubbins enhancement New feature or request
#76 opened Nov 20, 2024 by jimmyliu1326 updated Dec 11, 2024
2 tasks done
@azmigueldario
Create a Nextflow module for IQTREE enhancement New feature or request
#77 opened Nov 20, 2024 by jimmyliu1326 updated Dec 11, 2024
1 of 2 tasks
Pipeline fails when "test.fa" is missing bug Something isn't working
#90 opened Nov 27, 2024 by travis-m-blimkie updated Nov 27, 2024
1
Running the pipeline with only "--help" returns error bug Something isn't working
#89 opened Nov 27, 2024 by travis-m-blimkie updated Nov 27, 2024
Bug with aggregation of Quast reports bug Something isn't working
#73 opened Oct 21, 2024 by travis-m-blimkie updated Nov 27, 2024
@anwarMZ @jimmyliu1326
Add Preset Parameters for Common Analyses in BACPAQ Workflow enhancement New feature or request
#86 opened Nov 20, 2024 by anwarMZ updated Nov 27, 2024
4 tasks
@jonathho
Create a Nextflow module for igvreports enhancement New feature or request
#80 opened Nov 20, 2024 by jimmyliu1326 updated Nov 27, 2024
2 tasks
@KijinKims
Harmonization of Output Across Annotation Modules and Sub-Workflows enhancement New feature or request
#87 opened Nov 20, 2024 by anwarMZ updated Nov 20, 2024
5 tasks
Add description for the parameters exposed to the workflow documentation Improvements or additions to documentation
#27 opened Oct 31, 2023 by anwarMZ updated Nov 3, 2023
@azmigueldario
ProTip! no:milestone will show everything without a milestone.