Update gradle + deps

.gitignore

@@ -3,3 +3,4 @@ target
 src/main/resources/edu/stanford/cfuller/imageanalysistools/resources/version_info.xml
 .gradle
 build
+.DS_Store

build.gradle

@@ -1,36 +1,25 @@
-buildscript {
-    ext.kotlin_version = '1.1.0'
-
-    repositories {
-        jcenter()
-        mavenCentral()
-    }
-
-    dependencies {
-        classpath "org.jetbrains.kotlin:kotlin-gradle-plugin:$kotlin_version"
-        classpath "com.github.jengelman.gradle.plugins:shadow:1.2.4"
-    }
+plugins {
+    id "application"
+    id "org.jetbrains.kotlin.jvm" version "1.9.22"
+    id "com.github.johnrengelman.shadow" version "8.1.1"
 }
 
-apply plugin: "com.github.johnrengelman.shadow"
-apply plugin: "kotlin"
-apply plugin: "application"
-
 repositories {
     mavenCentral()
     maven {
-        url "http://maven.imagej.net/content/repositories/public"
+        url "https://maven.imagej.net/content/repositories/public"
     }
 }
 
+def kotlinVersion = "1.9.22"
 def DepVersionLoci = "4.4.5"
 def DepVersionIJ = "2.0.0-beta4"
 def DepVersionImgLib = "2.0.0-beta5"
 def DepVersionCommonsMath = "3.1.1"
 def DepVersionJRuby = "1.7.0"
 def VersionInfoFilename = "src/main/resources/edu/stanford/cfuller/imageanalysistools/resources/version_info.xml"
 
-def Version = "5.1.5-pre.0"
+def Version = "6.0.0"
 
 task updateVersionInfo(type: Exec) {
     commandLine "sh", "-c", (
@@ -39,20 +28,20 @@ task updateVersionInfo(type: Exec) {
 }
 
 dependencies {
-    compile "org.jetbrains.kotlin:kotlin-stdlib:$kotlin_version"
-    compile "org.jetbrains.kotlin:kotlin-reflect:$kotlin_version"
-    compile "org.slf4j:slf4j-simple:1.7.21"
-    testCompile "junit:junit:4.10"
-    testCompile "io.kotlintest:kotlintest:1.3.7"
-    compile "org.apache.commons:commons-math3:$DepVersionCommonsMath"
-    compile "loci:scifio:$DepVersionLoci"
-    compile "loci:bio-formats:$DepVersionLoci"
-    compile "loci:ome_tools:$DepVersionLoci"
-    compile "net.imagej:ij-core:$DepVersionIJ"
-    compile "net.imglib2:imglib2:$DepVersionImgLib"
-    compile "net.imglib2:imglib2-io:$DepVersionImgLib"
-    compile "net.imglib2:imglib2-algorithms:$DepVersionImgLib"
-    compile "org.jruby:jruby:$DepVersionJRuby"
+    implementation "org.jetbrains.kotlin:kotlin-reflect:$kotlinVersion"
+    implementation "org.slf4j:slf4j-simple:1.7.21"
+    testImplementation "junit:junit:4.10"
+    testImplementation "io.kotlintest:kotlintest:1.3.7"
+    implementation "org.apache.commons:commons-math3:$DepVersionCommonsMath"
+    implementation "loci:scifio:$DepVersionLoci"
+    implementation "loci:bio-formats:$DepVersionLoci"
+    implementation "loci:ome_tools:$DepVersionLoci"
+    implementation "net.imagej:ij-core:$DepVersionIJ"
+    implementation "net.imglib2:imglib2:$DepVersionImgLib"
+    implementation "net.imglib2:imglib2-io:$DepVersionImgLib"
+    implementation "net.imglib2:imglib2-algorithms:$DepVersionImgLib"
+    implementation "org.jruby:jruby:$DepVersionJRuby"
+    implementation "javax.xml.bind:jaxb-api:2.3.1"
 }
 
 build.dependsOn updateVersionInfo
@@ -67,4 +56,4 @@ jar {
 
 test {
     environment "PROJECT_ROOT", "$projectDir"
-}
+}

gradle/wrapper/gradle-wrapper.properties

@@ -1,6 +1,7 @@
-#Sat Feb 25 12:21:33 EST 2017
 distributionBase=GRADLE_USER_HOME
 distributionPath=wrapper/dists
+distributionUrl=https\://services.gradle.org/distributions/gradle-8.6-bin.zip
+networkTimeout=10000
+validateDistributionUrl=true
 zipStoreBase=GRADLE_USER_HOME
 zipStorePath=wrapper/dists
-distributionUrl=https\://services.gradle.org/distributions/gradle-3.4-all.zip